Duffyella gerundensis: EM595_3339
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Entry
EM595_3339 CDS
T04258
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
ege
Duffyella gerundensis
Pathway
ege03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ege00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EM595_3339 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ege03019
]
EM595_3339 (rhlB)
Enzymes [BR:
ege01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EM595_3339 (rhlB)
Messenger RNA biogenesis [BR:
ege03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EM595_3339 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
CCDC138_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
CUU25570
UniProt:
A0A0U5GS11
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All DBs
Position
1:3623068..3624357
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AA seq
429 aa
AA seq
DB search
MSKTHLTEKKFSDFALHPQVVEALEKKGFHNCTPIQALALPFTLSGRDLAGQAQTGTGKT
MAFLTSTFHHLLTHPAPEGRQVNQPRALIMAPTRELAVQIHADAEPLAESTGLKLGLAYG
GDGYDKQLKVLESGVDIIIGTTGRLIDYTKQNHINLGAIQVVVLDEADRMFDLGFIKDIR
WMFRRMPPATQRLSMLFSATLSWRVRELAFEHMNNVESVEVEPDQKTGHRIKEELFYPSN
EEKMRLLQTLIEEEWPDRAIVFANTKHRCEDVWGHLAADGHRVGLLTGDVAQKKRLRILD
DFTKGDIDILVATDVAARGLHIPAVTHVFNYDLPDDREDYVHRIGRTGRAGASGHSISLA
CEEYALNLPGIEEYIGHGIPVSKYNSDALLTDLPPAKRLARRTGSAPRRGGNNNRRGSAP
RNNNRKRSG
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaacacacttaaccgaaaagaagttttccgacttcgccctgcaccctcaggtc
gttgaagcccttgaaaagaaagggtttcacaattgcacgcctattcaggcgttagcatta
ccttttacgctctccggacgtgatttagcaggtcaggcgcaaaccggtaccggcaaaacg
atggcgtttttaacgtcaacgtttcatcatctgcttactcacccggcccctgaaggtcgt
caggtgaatcaaccccgtgccttaattatggcaccgacccgcgaactggcggtacaaatt
cacgcagacgctgagccactggctgaaagcaccggcctgaaactgggtctcgcttacggc
ggcgacggttacgacaaacagctgaaagtgctggaaagtggcgtcgatatcattattggt
accaccggtcgtttgatcgattacaccaagcaaaaccatatcaacctcggcgcgattcag
gtggttgtgctggatgaagccgatcgcatgttcgatctcggctttattaaagatatccgc
tggatgttccgtcgtatgccgccggctacccagcgtctgagcatgctgttctcagcaacg
ctgtcgtggcgcgtacgcgagctggcgtttgagcacatgaataacgtggagtcggttgaa
gttgaaccagaccagaaaaccggccatcgcattaaagaagagctcttctatccgtctaac
gaggagaagatgcgtctgctgcagacactgatcgaagaagagtggcccgatcgcgccatt
gtgtttgccaataccaaacaccgttgtgaagatgtctggggccatctggctgccgacggt
caccgtgtcggcctgctcaccggcgacgtggcgcagaaaaaacgcctgcggattctggat
gatttcaccaagggtgacatcgatattctggtggcaaccgacgtggcagcacgcggcctg
cacattccggcggtaacacacgtctttaactacgatctgcctgacgatcgcgaagattac
gtgcaccgcattggccgtaccggccgtgctggcgccagcggtcactcaatcagtcttgcc
tgtgaagagtacgcgctgaacctgccgggcattgaagagtatatcggccacggtattccg
gtcagcaagtacaacagcgacgcgctgttaacggatttgccaccggccaaacgcctggcg
cgccgtactggtagcgcaccgcgtcgtggtggaaacaacaatcgccgtggcagtgcgcca
cgtaacaacaaccgtaaacgttcgggttag
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