KEGG   Sinorhizobium garamanticum: PZN02_000676
Entry
PZN02_000676      CDS       T09001                                 
Name
(GenBank) ligase-associated DNA damage response DEXH box helicase
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
egi  Sinorhizobium garamanticum
Brite
KEGG Orthology (KO) [BR:egi00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:egi03400]
    PZN02_000676
Enzymes [BR:egi01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     PZN02_000676
    5.6.2.6  RNA 3'-5' helicase
     PZN02_000676
DNA repair and recombination proteins [BR:egi03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    PZN02_000676
SSDB
Motif
Pfam: DEAD_assoc WH_Lhr DEAD Helicase_C Cas3-like_C_2 ResIII PSD4
Other DBs
NCBI-ProteinID: WEX88210
LinkDB
Position
1:698024..700570
AA seq 848 aa
MFPVNRIDSPLPESDALTLPAPFLRWFAEKGWRPRAHQLELLSRAEAGESTLLIAPTGAG
KTLAGFLPSLVDLTRRGEIPPGSPFIGIHTLYISPLKALAVDIERNLMKPVAEMGLPVRI
ENRTGDTPQGKRQRQRLNPPDILLTTPEQLALLIANGEADRFFKDLRYVVLDELHSLVTS
KRGHLLSLGLARLRRLAPDLQTIGLSATVAEPMELQRWLVAQSEQRENHAGLIIVSGGAK
PEISILRTDEHVPWAGHSARYAIADVYAAIKDHGTTLLFVNTRSQAEMLFQELWTINDDN
LPIALHHGSLDVAQRRKVEAAMSENRLRAVVATSTLDLGIDWGDVDLVVHVGAPKGASRL
AQRIGRANHRMDEPSRAILVPANRFEVMECQAALDANYIGAQDTPPLGRGALDVLAQHVL
GAACAKPFDAVDLHREITSAAPYADLSWETFERIVDFVATGGYALRTYERYARIRKTKDG
LWRVSNPMVAQQYRLNVGTIVESPMLNVRMVKRNARGSLGRGGMTLGKVEEYFLEMLSPG
DTFLFSGKVVRFEGIRENECLVSQAFSFDPKVPTYAGGKFPLSTYLAAQVRKMLADPTRR
ASLPDQVRDWLTLQKDVSMLPREDELLIETFPRGSRHYMVIYAFEGRLAHQTLGMLLTRR
LDRAGLKPLGFVATDYSLAVWGLDDLSSAFRARRPSLAQLFDEDMLGDDLEAWLNESFLL
KRTFRNCAVIAGLIDQRHPGKEKTGRQITVSADLIYDVLRAHEPDHILLEATRSDAATGL
LDIGRLGSMLNRIKGHITHRRLDHISPLAIPVMLEIGKEVIHGEAHDFLLTVAADDLMNE
AMGAGHDG
NT seq 2547 nt   +upstreamnt  +downstreamnt
ttgttccccgtgaacaggatcgattctccattgccggaaagcgacgcgctgacgttgccg
gcgccgtttctccggtggttcgccgagaagggctggcgaccccgcgcccaccagctcgaa
ctcctatcgcgtgcggaggcgggagaaagcacgcttctgatcgcgccgactggtgccggc
aagacgcttgccggatttctgccgtcgctggtcgatcttacccggcgcggcgagatcccg
ccgggctctcctttcatcggcatccacacgctctacatatcgccgctgaaggcgctcgcg
gtcgacatcgaacgcaacctgatgaagcccgtagccgagatgggcctgccggtcaggatc
gagaaccggacgggcgacacgccgcagggcaagcgacagcgccagaggctcaatccgccg
gatatcctgctgaccacgccggagcaactggccctcctcatcgccaatggcgaggcagac
cgcttcttcaaggatctgcgctacgtcgtgctcgacgaattgcactcgctggtgacctcg
aagcgcgggcatctgctctcgctcggccttgcacgactgcgccggctggcgcccgatctc
cagacgatcggtctttcggcaaccgtggccgaaccaatggagttgcagcgctggctcgta
gcccagagcgaacaacgggagaatcatgccggactgatcatcgtttccggcggcgcgaag
ccggaaatttcgatcctgcgcaccgacgagcacgtgccctgggccgggcattcggcccgc
tatgcgatcgccgacgtctacgccgcgatcaaggatcacggcacgacgctgcttttcgtc
aacacccgcagccaggcggaaatgctgttccaggaactctggacgatcaacgacgacaac
ctgccgatcgccctccatcacggctcgctcgatgtcgcgcaacgccgcaaggtcgaggcg
gccatgtcggaaaaccggctgcgggccgtcgtcgccacctcgacgctcgatctcggcatc
gactggggcgatgtggatcttgtcgtccatgttggcgcacccaaaggggcgagccgtctt
gcccaacgcatcggtcgcgcgaaccaccgcatggacgagccgagccgggcgattctcgtg
cccgccaaccgctttgaagtgatggaatgccaggcggcgctcgacgccaattatatcggc
gcgcaggatacgccgcctctcggcagaggcgcgctcgacgtgctggcccaacatgtcctg
ggagccgcctgcgcgaaacccttcgatgccgtcgatcttcatcgggagatcaccagtgcg
gccccttacgcggacctttcctgggagactttcgaacgcatcgtcgatttcgtcgccacc
ggcggctatgcacttcgcacctacgagcgctacgcccgcatccgcaagacgaaagacggg
ctctggcgggtgtcgaacccgatggtcgcccagcaataccgcctcaatgtcggaaccatt
gtcgaatccccgatgctgaacgtgcgcatggtcaagcgcaacgcacgcggctcgcttggc
cgcggcggcatgacgctcggcaaggtggaggaatatttcctcgaaatgctgtcgccgggc
gacacatttctcttttccggcaaggtcgtgcgtttcgagggcatccgcgaaaacgagtgc
ctcgtctcccaagccttttccttcgacccgaaggtgccgacctatgccggtggaaaattc
ccgctctccacttacctcgcggcgcaagttcgcaagatgcttgccgatccgacccgccgc
gcctcattgccggaccaggtgcgcgactggctgacgctgcagaaggacgtctccatgctg
ccgcgcgaggacgagttgctgatcgagaccttcccgcgcggcagccgccactacatggtg
atctatgccttcgaggggcggcttgcgcaccagacgcttggcatgctcttgacccgacgc
ctggaccgcgcaggcctgaaaccgctcggcttcgtcgcgaccgactattcgcttgccgtc
tggggactcgacgatctcagcagcgccttccgggcgcgtcggccgtcgctcgcgcaactc
ttcgacgaagacatgctcggcgacgacctcgaagcctggttgaacgaatccttcctcttg
aagcgcacgtttcgcaactgcgccgtcatcgccggattgatcgaccagcgccacccgggc
aaggagaagacagggcgacagattaccgtttcggccgatctcatttacgatgtattgcgg
gcgcacgagccggaccacatactgctggaggcaacacgcagcgacgccgcgacgggactt
ttggacatcggccggctcggatctatgctgaaccgaatcaaggggcacatcacccaccgc
cggctcgatcatatctcgccgcttgccatccccgtgatgctggagatcgggaaggaagtg
atccacggagaggctcacgacttcctgctgacggtggcggccgatgacctgatgaacgag
gcgatgggcgccggccatgatggatag

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