Sinorhizobium garamanticum: PZN02_001180
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Entry
PZN02_001180 CDS
T09001
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
egi
Sinorhizobium garamanticum
Brite
KEGG Orthology (KO) [BR:
egi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egi03019
]
PZN02_001180 (hrpB)
Enzymes [BR:
egi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PZN02_001180 (hrpB)
Messenger RNA biogenesis [BR:
egi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PZN02_001180 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
CON_HrpB
HA2_N
ResIII
AAA_19
Motif
Other DBs
NCBI-ProteinID:
WEX88671
LinkDB
All DBs
Position
1:1240756..1243215
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AA seq
819 aa
AA seq
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MRDLPPLPVRDILPRIGEALKAAPSVVLSAPPGAGKTTLVPLFLLDQPWLKGGKVILLEP
RRLAARAAAGRMAELLGEKVGETVGYRMRLDNRISARTRIEVVTEGVFSRMILDDPELSG
VSAVLFDEFHERSLDADFGLALALDVQSALRDDLKIVVMSATLDVARVAKLLGDAPVIES
QGRSFPIDIRYEDRNAGESAEDAVARAIVEAHRSEAGSILAFLPGQGEITRTAERLAGRF
DEKTAIVPLYGNLSQKEQDAAIRPAPAGTRKIVLATSIAETSITIDGVRIVVDSGLQRLP
VFEPSTGITRLETVRVSRASADQRAGRAGRTEPGIAIRLWHPGQTAALVAFTPPQILASD
LSGLLLDLAHWGVADPSALAFIDPPPETTLREARSLLIELGALDANGALTPHGRRIRDLA
LPVRLAAMAVSAAEEGEAQEACLLAVMLTEQGLGGDSLDLEERLRRFRADRGDRADAARG
LARRMAADLKAQKSNGQSALPGPLLMHAFPDRIALQRGGRGRFVMANGRGAEVPETERLA
AAGMLVIADLTGRAGAQRVLAAAEITRADVEAHMPEAIRREEQIFFDRTSRQVRARRVTR
LGAIIFEETPLSRPSGEAAARALADGVRQMGLAVLPFSKETAQLRDRIGFLHRSIGEPWP
GVSDEALLARLDDWFVPFQHGAGSIDGIKAHDLAEGLLSLVPYDLQRDLGKLAPTHFEAP
TGHRHPIHYDGDEPLLSIRVQELFGLKAHPTIGNGRLPLLLELISPGHRPIQTTRDLPGF
WSGSWRDVRADMRGRYPKHPWPEDPANAMPTTRAKPRGT
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgatctcccgccgctgccggttcgtgacattcttccccgaataggcgaagcgctc
aaagcggcgccgtccgtggtgctctcggcgccgccgggtgccggcaagacgacgcttgtg
ccgctctttcttctggaccagccctggctcaaaggcggcaaggtgatccttctggagccg
cgcaggctcgccgctcgtgcagccgcaggacggatggccgagttgctcggagaaaaggtc
ggcgagacagtcggctatcgcatgcggctcgacaacagaatatcggcccggacccggatc
gaggtggtgaccgaaggcgtcttcagccggatgatcctcgacgaccctgaactctccggc
gtttccgccgtgctcttcgatgaattccacgagcgctcgctcgacgccgatttcggcctg
gcgttggcgctcgacgtgcaatccgctttgcgcgacgacctgaagatcgtcgtcatgtcg
gcaacactcgacgtcgcgcgggtcgccaagctgcttggtgatgctcccgtcatcgaaagc
cagggccgcagctttccgatcgatattcgctacgaggacaggaacgccggcgagagcgcc
gaggacgcggtcgcgcgggcgatcgtagaagcacaccgatccgaggcggggtcgatcctc
gccttccttccgggccagggggaaatcacccgcaccgccgagcgtctcgccggacgtttc
gacgagaagaccgctatcgtgccgctttatggcaacttgagccagaaagagcaggatgcg
gcgatccgcccggcaccggccggcacgcgcaagatcgtgcttgcgacgtcgatcgcagag
acctcgatcaccatcgacggcgtgcgcatcgttgtcgacagtggcctgcagcggctgccg
gtgttcgaaccctcgacagggataacgcggctcgagaccgtgcgcgtatcgcgggcatcc
gccgatcagcgcgccgggcgcgccgggcgaaccgagcctggaatcgcgatacgcttgtgg
cacccgggccagaccgcagcccttgtggccttcacgccgccgcagatccttgcgagcgat
ctttcgggccttctgctcgacctcgcccattggggcgttgccgacccatccgcgctcgcc
ttcatcgatccgccgccagagacgacgttgcgcgaggcgcgcagcctgctcatcgagctt
ggagcgctcgacgccaacggtgcgctgaccccgcacggccgtaggatacgcgacctcgcg
ctgcccgtccggctggcggcaatggcggtctcggcggccgaagagggcgaggcgcaggag
gcctgcctgctggcggtgatgctgaccgagcagggcctcggcggcgacagtctcgacctc
gaggagcggctgcgccggttccgcgcggaccgcggcgatcgcgccgatgccgcacggggc
ctggcgagacgcatggcggccgacctcaaggcacagaagagcaatggccaaagcgcgctg
cccgggccgttgctgatgcacgcctttcccgaccggatcgcgctccagcgcggcggccgc
ggacgctttgtcatggcgaacggacggggcgccgaagtaccggaaaccgaacgacttgcc
gcggcgggaatgctggtcatcgccgatctgaccggaagggcgggagcgcagcgcgtgctg
gcagccgcagaaatcaccagggcggacgtcgaggcgcatatgccggaggcgatccggcgc
gaggagcagatcttcttcgatcgaacgagccgccaggtgcgcgcgcgccgcgtcacccgg
ctcggcgccatcatcttcgaggaaacgccgctttcacgcccgagcggcgaagcggccgca
cgcgcgctcgccgacggcgttcgtcaaatggggcttgcagtgctgcctttctcgaaggaa
acggcacagctgcgcgaccgtatcggctttctccataggtcgatcggcgaaccctggccg
ggcgtctcggatgaggcattacttgcgcgcctcgacgactggttcgtgccgtttcagcac
ggcgccggcagcatcgacgggatcaaggcccatgatttggcagaaggtctgctgtcgctc
gttccctacgatcttcagcgcgacctcggtaagctcgcgccgacgcatttcgaagcgccg
accgggcaccgccatcccatccattacgacggcgacgagcccttgctttcgatccgcgta
caggaacttttcggcctgaaagcgcatccgacgatcggcaatggccggctgccgctactc
ttggaactcatctcccccggccaccgcccgatccagacgacacgtgacctgccgggcttc
tggagcggttcgtggcgggacgtaagagccgacatgcgcgggcgctatccgaagcatccc
tggccggaggacccggcgaacgcgatgccgacgacacgcgccaagccgcgtggtacatga
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