Sinorhizobium garamanticum: PZN02_001215
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Entry
PZN02_001215 CDS
T09001
Symbol
addA
Name
(GenBank) double-strand break repair helicase AddA
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
egi
Sinorhizobium garamanticum
Brite
KEGG Orthology (KO) [BR:
egi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
egi03400
]
PZN02_001215 (addA)
Enzymes [BR:
egi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PZN02_001215 (addA)
DNA repair and recombination proteins [BR:
egi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
PZN02_001215 (addA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
UvrD_C_2
AAA_19
PDDEXK_1
SLFN-g3_helicase
NPHP3_N
DEAD
Motif
Other DBs
NCBI-ProteinID:
WEX88705
UniProt:
A0ABY8DGP6
LinkDB
All DBs
Position
1:1281906..1285472
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AA seq
1188 aa
AA seq
DB search
MRDDAFGPRETTPRAWLDWTTERQSLASDPVRSAWVSANAGSGKTHVLTQRVIRLLLAGC
RPSAILCLTYTKAAASEMSNRVFERLAEWATLDDASLEKRIEAIEGARPSAVKIQEARRL
FAAALETPGGLKIQTIHAFCEALLHQFPLEANVAGHFSVLDDSAAAVLLADARRALLAAT
AANDAELAGAFATVLDLADDTGLERLLATIVANRTPIQAFLDRASKRGGLEAHLRASLTI
APGETAESVLAKVWPLAGLNGAALEQYLDLAARKGGAKPSEFAEGLKAVGRLADPEERYR
TLVGLFFNGGGKPRAGSTFLNAAMRREAPDLAPLVEQARDHVVACVDRLSVVRMYEATRA
ALTLAERLNRDYEEIKKARSQLDFEDLINRTAALLARGDVGAWVHYKLDQGIDHILVDEA
QDTSPAQWTIIQSLAADFFAGETARADERTIFAVGDEKQSIYSFQGARPERFSRESIVTE
RRVRAGGKYFSPIRLQLSFRSTIDVLSAVDTVFANKANAKGLSAKEDAIVHASNRIGHAG
AVDVWDVIAPEPVLAEEEWTAAFDATPERAPANILARRIAAVLDDWIGKETIIEKGVRRP
MRPGDIIVLVRKRDAFVNALTRALKRRNNIPVAGADRLVLTSHIAIQDLMALGRFALLPD
DDLSLAALLKSPLINLGESDLFELAAGRAETESLWQRLQSLGVDETSRYHPVARTLSQYA
DLARHMLPHDFYARILGVLGGRAAFLARLGSEVSDILDEFLTFALDHERTGLPGLQAFIS
TLEIEAPTVKREQDKERDEVRVMTVHAAKGLEAPVVFLVDGGGKAFNSQHVPDLRLFEKQ
RPDGSIVTVPVWRAPGSGTNSLLNADNARLKALAEEEYRRLLYVGMTRAADRLVICGYRG
QRENTDTWHAMVQGTLAQDIKGRGTPMVFRAGGEEWTGHVWREAHAHIDATIADGMQAGG
EHTTPGLPATLSAPLPPLRRLPRPLTPSGTNIVIDDPDSESIVGSALFTEKAAPNRSLLR
GAILHRLLQVLPSIDPAERRAAADRYLLRSVPRWSEPERRALADAVMNVLDHPDLNTLYT
AHSRAEVSVMGTLVLGGREFAVSGRVDRLTVSGDTVTIADFKTNRQVPTSLAEVPPVYRT
QLAIYRELLKPLYPGRRFRCALIYTEGPAIQVLPEAMLDRSLEELATK
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
atgagggatgacgctttcgggcctcgggaaacgacaccccgggcctggctcgactggaca
acggagcggcaatcgcttgcctccgatccggtgcgctcggcctgggtttccgccaatgcc
ggatccggcaagacgcacgtcctgacccagcgcgtcatccgcctgctgctcgccggctgc
cgcccttctgcgattctctgcctcacctatacgaaggccgccgcttcggaaatgtcgaac
cgggtgttcgagcgcttggccgaatgggcgacgcttgacgacgcctcgcttgagaagcgt
atcgaagcgatcgaaggcgcccggccatcggccgtgaaaattcaagaggcgcggcggttg
ttcgccgccgcgcttgagacgcccggtggcctgaagatccagacgatccacgccttctgc
gaagcgctcctgcatcagtttccgctcgaggccaatgtcgccgggcatttttccgtgctc
gacgacagcgccgccgccgtcctgctcgcggatgcacggcgagcgttgctggcggctacc
gcggcgaacgacgcagagctcgctggcgccttcgccacggttctcgatctcgccgacgat
accggtcttgaacgattgctcgcgacgatcgtcgccaaccgtacgcccattcaagccttt
cttgatcgcgcctcgaagcggggtggattggaagcgcatctgcgcgcatcgctcacgatt
gcgcccggcgaaaccgccgaaagcgtgctggcgaaggtctggccgctggctggcctgaac
ggggcggctcttgagcaatatctcgacctggcagcacgcaagggcggcgccaagccctca
gagtttgcggaaggattgaaggcggttggaaggctcgccgatcccgaggagcgctaccgc
acgctggttgggctcttcttcaacggcggcggcaagccgagggctggctcgacctttctc
aacgcggcgatgcggcgcgaggcgcctgacctcgcacccctggtggagcaagcgcgcgat
catgtcgtggcctgcgtggatcggctcagcgtcgtcaggatgtacgaggcgacacgtgcc
gctctcaccctcgccgaaaggctcaaccgcgattacgaggaaatcaagaaggcgcgcagc
caactcgatttcgaggatctgatcaatcgcacggccgcgcttctcgcgcgcggcgatgtc
ggtgcgtgggttcactacaagctcgaccagggcatcgaccacattctcgtcgacgaggca
caggacacgagccccgcgcaatggacgatcatccagtcgcttgccgccgatttcttcgcc
ggagagacggcgagagcggacgagcggacgatcttcgccgtcggcgacgagaagcaatcg
atctattcgttccagggtgcacggccggagcgcttctcccgcgagagcatcgtgacggag
cggcgggtgcgcgcaggcggaaaatacttcagcccgatccgcctgcagctttccttccgg
tcgaccatcgacgtcctttcggcggtcgacaccgtctttgccaacaaagcgaacgccaag
ggactcagcgcgaaggaagatgcgatcgtccatgcctcgaaccggatcggccatgccggc
gcggtcgacgtatgggacgtgatcgcgcccgaaccggtgctcgccgaagaagagtggaca
gctgcgttcgatgcgacgcccgagcgcgcgccggccaacattctggcccgacgcatcgcc
gcggttctcgatgactggatcggcaaggagaccatcatcgagaagggggttcgccgaccg
atgcggccgggcgacattattgtcctcgttcgcaagcgcgacgctttcgtcaatgcgttg
acgcgggccttgaagcgcagaaataacatcccggtcgccggcgccgaccgcctcgtgcta
accagtcacattgcgattcaggacctgatggcgctcggccgctttgcgctgctgccggac
gacgacctttctctcgccgcgctcttgaaaagcccgctcatcaatcttggcgagagcgat
cttttcgaacttgcggcgggaagggcggaaaccgagagcctctggcaacgcctgcagagt
ctcggagtcgacgagacgagccgataccacccggtcgcgcgcacgctttcgcaatatgcg
gatctcgcccgccacatgctgccgcacgatttctacgcccgcatcctgggcgttctgggc
ggcagggcggctttccttgcccggctgggcagcgaggtcagcgacattctcgatgaattc
ctgacgttcgcgctcgatcacgaaagaaccggcttgcccggcctgcaggccttcatctcg
acgctcgagatcgaagcgccgacagtcaagcgcgagcaggacaaggagcgtgacgaagtg
cgcgtcatgaccgtgcacgcggcaaagggcctggaggcgccggttgtcttcctcgtcgac
ggcggcggcaaggccttcaacagccagcatgttcctgatctccgccttttcgaaaagcag
cggccggacggttccatcgtcaccgtgcctgtctggcgggcgcccggctctggaacgaat
tccctgctcaacgccgacaatgcccgcctgaaggcactggcggaggaggaataccggcgc
ctcctctatgtcggcatgacccgcgccgcagaccggctcgtcatatgcggctatcgcgga
cagagagagaataccgatacctggcacgccatggtccaggggacgttggcgcaggatatc
aagggacgcgggacgccgatggtgttccgcgcgggcggcgaagaatggacgggccacgtg
tggcgcgaggcgcacgcccatatcgacgccaccattgccgatggcatgcaagccggggga
gagcacacgacgccgggcctgcccgccacgctgtccgccccgttgccgccgctgcgtcgg
ctgccgcggccgctcaccccatccggcaccaacattgtcatcgatgatccggacagcgaa
tcgatcgtcggatcggcgctcttcaccgaaaaggcagcacccaatcggtcgctgctgcgc
ggcgccatccttcatcggctgctgcaggttctcccgtcgatcgatcctgcggaacgccgg
gcggcggcagaccgctatctactgcggtcagtcccacgctggtccgagccggagcgtcgg
gcgcttgccgatgccgtaatgaatgtgctggaccacccggacctcaatacgctctatacc
gcgcacagccgggcggaagtttccgtcatgggaacgctcgtgctcggcgggcgtgagttc
gcggtgtcgggccgtgtcgatcggctgaccgtttccggcgatacggtgacgattgcggac
ttcaaaacgaatcgccaggtgccaacgtctctggctgaggtcccacctgtctacaggacg
cagcttgccatttaccgggaactgctcaagccgctctatcccgggcgacggttccgttgc
gcgctgatctacaccgagggaccggcaatccaggtgcttcccgaagcgatgctggacagg
agccttgaagagctcgcgacaaagtga
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integrated database retrieval system
