KEGG   Sinorhizobium garamanticum: PZN02_001252
Entry
PZN02_001252      CDS       T09001                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
egi  Sinorhizobium garamanticum
Pathway
egi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:egi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PZN02_001252 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:egi03021]
    PZN02_001252 (rho)
   03019 Messenger RNA biogenesis [BR:egi03019]
    PZN02_001252 (rho)
Transcription machinery [BR:egi03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     PZN02_001252 (rho)
Messenger RNA biogenesis [BR:egi03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     PZN02_001252 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N AAA_22 OB_RNB AAA_25 S1CSD-TOTE-2 NACHT AAA Fungal_virus_P2_C DUF6360
Other DBs
NCBI-ProteinID: WEX88742
UniProt: A0ABY8DGC5
LinkDB
Position
1:1322106..1323371
AA seq 421 aa
MAEMKLQELKNKTPTDLLAFAEELEVENASTMRKQELMFAILKMLATQEIEIIGEGVVEV
LQDGFGFLRSANANYLPGPDDIYISPSQIRRFSLKSGDTVEGPIRGPKEGERYFALLKVN
TINFDDPEKIRHKVHFDNLTPLYPNERFKMELEVPTSKDLSARVIDLVAPLGKGQRGLIV
APPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAT
RHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIFPA
MDILKSGTRKEDLLVPRQDLQKIFVLRRILAPMGTTDAIEFLIDKLKQTKTNSDFFESMN
T
NT seq 1266 nt   +upstreamnt  +downstreamnt
atggctgaaatgaagcttcaagaacttaagaacaagacgccgaccgatctcctggccttt
gccgaagagctcgaggtcgagaatgccagcacgatgcgcaagcaggagctgatgttcgca
atcctcaagatgctcgcgacgcaggagatcgagattatcggtgaaggcgtcgtcgaggtg
ctgcaggacggtttcggcttcctgcgctccgctaacgcaaactaccttcccggcccggac
gatatctatatctctccctcgcagatccgacgcttttcgctgaagagcggtgacacggtc
gaagggccaattcgcggtccgaaagaaggcgagcgctacttcgcgctgctgaaggtcaac
acgataaacttcgacgatccggaaaagatccggcacaaggtgcacttcgacaacctgacg
ccgctctacccgaacgagcggtttaagatggagctcgaggttccgacgtcgaaggacctt
tccgctcgcgtcatcgatctggtagcgccgcttggcaagggccagcgcgggctgatcgtg
gcgccgccgcgcaccggtaagaccgtgctcctgcagaacatcgcccattcgatcaccgcg
aaccatccggagtgctatctgatcgttctcttgatcgatgaacgtccggaagaagtgacc
gacatgcagcgctcggtgaagggcgaggtggtatcctcgaccttcgacgagccggcgacg
cgccacgtccaggttgcggaaatggtcatcgagaaggcgaaacgtctcgtcgagcatggc
agggacgtcgtcattctgctcgattcgattacccgtcttggccgcgcctacaacaccgta
gtgccgtcatccggcaaggtgctcaccggcggtgtcgacgccaacgcgcttcagcgtccg
aagcgtttcttcggcgcggcgcgtaacatcgaggaaggcggctcgctgacgatcatcgcg
acggccctgatcgataccggcagccgcatggacgaagtgatcttcgaagagttcaagggc
accggcaactccgaaatcgtgctggaccgcaaggtcgccgacaagcgcatcttcccggct
atggacatcctgaagtccggcacacgtaaggaggatcttctggtgccgcggcaggatctc
cagaagatcttcgttctgcgccgcatcctcgctccaatgggcacgaccgatgcgatcgag
ttcctgatcgacaagctgaaacagacgaagaccaacagcgacttcttcgaatcgatgaac
acctga

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