Sinorhizobium garamanticum: PZN02_002047
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Entry
PZN02_002047 CDS
T09001
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K07464
CRISPR-associated exonuclease Cas4 [EC:
3.1.12.1
]
Organism
egi
Sinorhizobium garamanticum
Brite
KEGG Orthology (KO) [BR:
egi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02048 Prokaryotic defense system [BR:
egi02048
]
PZN02_002047
Enzymes [BR:
egi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.12 Exodeoxyribonucleases producing 3'-phosphomonoesters
3.1.12.1 5' to 3' exodeoxyribonuclease (nucleoside 3'-phosphate-forming)
PZN02_002047
Prokaryotic defense system [BR:
egi02048
]
CRISPR-Cas system
Type I CRISPR-Cas system
Subtype I-A factors
PZN02_002047
Subtype I-B factors
PZN02_002047
Subtype I-C factors
PZN02_002047
Subtype I-D factors
PZN02_002047
Type II CRISPR-Cas system
Subtype II-B factors
PZN02_002047
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
NACHT
Motif
Other DBs
NCBI-ProteinID:
WEX85812
LinkDB
All DBs
Position
1:2205399..2208713
Genome browser
AA seq
1104 aa
AA seq
DB search
MILADSPARLRILTDLGSTLLVEAAAGTGKTALMAGRLTMLLARGAEPGAIAAITFTELA
ASALSARVHRYIEELLAGRVPQPLRLALPNGLDEDQQRALSAAAVKLDELTTATIHAFCQ
TIISSYAVEADIDPGARILDAVQAAAGFDSVFEQWLKRRLNGEERPGDPIATLSRDDPRR
IVGTLQELARFRLRYRGAHTLPANLGGRPDIDLVDAVADFRRWISSQPGEPKTLELVSEL
ETLANFYAGSFDPPPGFAALWRLAHPPHLRCMRRNSFDLLTPRRKSAWERVAGRELGARL
DEEANACFERVNRCYRILLGRIATALVAQLSAELDEVLDDYAAFKRAAAVLDFDDLLEKA
RALVGQHDDVRRALGQRYRHIFVDEFQDTDPTQTEILFRIAAEDRAERWQDSNLRAGALF
MVGDPKQAIYRFRGADIGSYAQARAAIERQWPDKIVQVTANFRSRPDILAHINRCFARPL
SGDGQPGYVPLAPTLDGPDHDMPCAARITVDVPPDSRPAQIRDAEAEAVADLCARLVGNL
RVPDEDGTIVPLTAGDIALLAPTGAELWRYERALEQRGLPIASQAGKSLFRRQEVQDLLA
LARVLANAGDTLAFGALMRGPLVGLAEEELLDITAALPPHPDRPDAPPHFSLLTDLNHVT
HPIARRTLAILQELRRRVRATTPAFLLAEAAERLAVRPILAAREGDRSGRAAANVEAFLE
RARPYGVRGLKKFVRDLAREWRDGASHSEGRVDAEGDAIEIITIHSAKGLEWPVVIPINT
GTLLRSRQPFVYRTADETLHWLIGDVVPPDLLRALETEDDSLARERERLWYVACTRAREL
LIVPELPQAEQRSWARIVDLAHQDLPQLNLSRLTPAVRTIDVELPNGQTEEVFDRERAVI
ATASKPLHWLRPSDSDQDRVPMGETIAIELGDAPETELPVGAGRVRGLILHKLMEEVFTG
ELPEGPSAFAARARVLMSELVIDAEGGAQAPDPDEIAATVLRTLALPEIAALRPNLVPEW
PIYAVLSDRPEPTALTGRIDAMALQDGQPAVVLDWKSDVAPTEHDMRDHTIQLSDYLRAT
GAPRGAVIYMTNGVIRWITASSPQ
NT seq
3315 nt
NT seq
+upstream
nt +downstream
nt
atgatactcgctgacagccccgcgcggctgcgcattctcaccgatctcggctccaccttg
ctcgtcgaggccgccgccggcaccggcaagacggcgctgatggccggacgcttgaccatg
ctgctcgcacgtggcgccgagcccggtgcgatcgccgccatcaccttcacggagcttgcc
gcgagcgcgctttcggcgcgcgtgcatcgctatatcgaggagctgctagcgggccgcgta
cctcaaccgctgcggcttgccttgcccaacggactcgacgaagaccaacagcgtgcgctc
tcggccgctgcggtcaagctagacgagctcaccaccgctacaatccacgccttctgccag
acgatcatctccagctacgcggtcgaggccgacatcgatccgggcgcgcgcatcctcgac
gcggtccaggcggcggccggtttcgactcggtgttcgagcagtggctgaagcggcgattg
aatggggaggagcggcccggcgatcccattgcgacgctctcgcgcgacgatccgcgccgc
atcgtcgggaccctccaggagctcgcacgattccgcttgagatatcgcggcgcgcacacg
ctgcccgccaacctcggcggtcggcccgatatcgatctggtcgatgctgtcgcggatttc
cggcgctggatctcgtcgcagccgggcgagcccaagaccctggaactggtcagcgagctc
gagacgctcgccaatttctatgccggcagctttgatcctccgcccggttttgcggcgctc
tggcgcctagcgcatccgccgcacctgcgctgcatgcgtcgaaacagcttcgatctgctc
acgccgaggcggaaatcggcctgggagcgagtcgcaggcagggagctcggcgcgcgcctc
gacgaggaagcgaacgcgtgcttcgagcgtgtcaatcgctgctaccggatactgctgggg
cgtatcgcgaccgcgctggttgcccagctctccgccgagcttgacgaagtgctcgacgac
tatgccgccttcaagcgcgccgccgcggtcctcgatttcgacgacctgctcgagaaggcg
cgggcgctggtaggccaacatgacgatgtgcggcgcgcgcttgggcaacgctatcgtcac
atcttcgtcgacgaattccaggacaccgatccgacccagacggagattctcttccggatc
gcggcggaggatcgtgccgaacgctggcaggacagcaacctgcgcgcgggagcgctgttc
atggtcggcgacccgaagcaggcgatctatcgctttcgcggcgccgacatcggctcctat
gcgcaggcgcgcgccgccattgagcgccaatggccggacaaaatcgtccaggtcaccgcc
aacttccgctcgcgtcctgacatcctcgcgcacatcaaccgctgcttcgcgcgtccgctg
tcgggcgacggccagcccggctacgtaccgctcgcgccgacgctcgatggccccgaccat
gatatgccttgtgcggcgcggataacggtggacgtgccgcccgactctcggcccgcccag
atccgggacgccgaggccgaagcggtcgccgacctctgtgcgcgcctcgtcggcaatctg
cgcgttcccgacgaggacgggacgatcgtgccgctcaccgccggcgacatcgccttgctt
gccccgaccggcgccgagctctggcgctacgagcgcgcgctcgagcagcgcggccttccg
atagcgtcgcaggccgggaaaagcctgttccgtagacaggaggtgcaggatctgctcgcg
ctggcccgagtgctcgccaatgccggcgacacgctggcgttcggcgcgctgatgcgcggc
ccgctggtcgggctagccgaggaggagctgctcgacatcaccgcggcgcttcccccgcat
cccgatcgccctgatgcgccgccgcacttttcgcttctgaccgatctcaatcacgtcacc
catccgatcgcgcgtcgaacgctcgcgatcctgcaggagctcaggcgacgcgtgcgggcg
accacgccagcgtttctcctcgccgaagcggccgaacgtctcgcggtccggccgattctc
gctgcacgcgagggcgatcgcagcggccgcgccgccgccaacgtcgaagcatttctggaa
cgcgcgcggccctatggtgtgcggggtctcaagaagttcgtccgcgatctcgctcgggaa
tggcgcgacggcgcttcccacagtgagggacgggtcgacgcggaaggcgatgcgatcgag
atcatcaccattcacagcgctaagggcctcgaatggccggtcgtgatcccgatcaacacc
ggcaccttgctccgctctcgtcagccgttcgtctatcgcaccgctgacgagacgctgcat
tggctgatcggcgacgtcgttccgcccgatctgcttcgcgcgcttgaaaccgaagacgac
agcctggcgcgtgagcgtgagcgcctctggtatgtcgcctgcacgcgggcccgcgagctt
ctgatcgttcccgaattgccgcaggccgagcagcggtcgtgggcgcggatcgtcgatctc
gctcatcaggacctcccgcagcttaacctttcgcggctcacgccagcggtccgcacgatc
gacgttgagctcccgaacgggcagacagaggaggtatttgatagggagcgcgccgtcatt
gccaccgcctcgaagccgctccattggctgaggccgagcgatagtgaccaggatcgtgtg
ccgatgggcgagacgatcgcgatcgaactcggcgatgctcccgaaaccgaattgccggtt
ggcgcagggcgcgtgcgtggcctgatcctacacaagttgatggaggaggtgttcaccggc
gaactccccgagggcccatcggccttcgccgcgcgggcgcgtgtgctaatgagcgagctc
gtgatcgacgccgagggtggcgcgcaggctcccgacccagacgagatcgcggcgaccgtt
ttgcgtaccctcgcgctgcccgaaatcgccgcgctcaggccgaatcttgtccccgaatgg
ccgatctacgcggtgctttcggaccggccggagccgaccgcgctcaccggacggatcgac
gcgatggcgcttcaagacgggcaacctgccgtcgtgctcgactggaagagcgatgtcgca
ccgaccgagcacgatatgcgcgaccataccattcagctgagtgactatctccgcgcgacc
ggagcaccgcggggtgccgtgatctacatgacgaatggtgtcattcgatggataacagct
agctcgccacagtga
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