Sinorhizobium garamanticum: PZN02_002066
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Entry
PZN02_002066 CDS
T09001
Name
(GenBank) CDC48 family AAA ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
egi
Sinorhizobium garamanticum
Pathway
egi04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
egi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
PZN02_002066
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egi03019
]
PZN02_002066
03009 Ribosome biogenesis [BR:
egi03009
]
PZN02_002066
04131 Membrane trafficking [BR:
egi04131
]
PZN02_002066
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
egi04147
]
PZN02_002066
Messenger RNA biogenesis [BR:
egi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
PZN02_002066
Ribosome biogenesis [BR:
egi03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
PZN02_002066
Membrane trafficking [BR:
egi04131
]
SNARE
SNARE associated proteins
Others
PZN02_002066
Autophagy
Aggrephagy
Other aggrephagy associated proteins
PZN02_002066
Exosome [BR:
egi04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
PZN02_002066
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
AAA_16
RuvB_N
AAA_5
AAA_2
AAA_22
CDC48_2
AAA_33
TIP49
AAA_14
IstB_IS21
AAA_28
nSTAND3
NPHP3_N
RNA_helicase
AAA_18
NACHT
Mg_chelatase
ABC_tran
AAA_3
AAA_7
AAA_17
AAA_30
Sigma54_activat
AAA_lid_PRS2_C
AAA_24
DUF815
PhoH
TsaE
AAA_11
AAA_19
NB-ARC
SLFN-g3_helicase
Zeta_toxin
Vps4_C
bpMoxR
Sigma54_activ_2
Parvo_NS1
Molydop_binding
Motif
Other DBs
NCBI-ProteinID:
WEX85831
LinkDB
All DBs
Position
1:complement(2228527..2230803)
Genome browser
AA seq
758 aa
AA seq
DB search
MAQSQDNTVKLQVANTRPEDSGGPFARITPRIMSALGVEEGDIIEIVGKRHTGAIAFRGY
AEDEGLNIIRLDGLQRVNAGATSGDYVEVHKVDARPAQRVVLAPAQKNLRLQGSGEALQR
TFFRRPMAAGDVISTSVHQRISRNVRTEHDIMRGLVELPAYGLQEIRLVVVSTQPRGIVT
MGENTVVELRPEYEEPKEARRADVTYDDIGGLGNAVDQVREMVELPLRHPELFQRLGIDP
PKGVLLHGPPGTGKTLLARAVANETEAHFYHIAGPEIMGSQYGESEQRLRQVFEEAAKNA
PSIIFLDEIDSIAPKREKVTGEVERRIVAQLLTLMDGLEPRQNIVVIGATNRRDSIDEAL
RRPGRFDREIVIGVPDQKGRREVLAIHTRGMPLAEDVDLDEIARTTYGFVGADVGALARE
AAMDSLRRILPDINLREGIPSEVLENLSVNQADFLTALKRIQPSALREIMIQAPDVRWAD
IGGLDDAQMRLREGVELPLRSPQSFKRMGIRPAKGFLLFGPPGTGKTLLAKAVAREAEAN
FVATKSSDLLSKWYGESEQQVSQLFERARQVAPTVIFIDEIDSLAPARGGGIGEPAVTER
VVNTLLAEMDGLEDMQGVVVMAATNRPNLLDPALLRPGRFDELVYVPVPDEKGRRKILGV
HTRKMPLAKDVDLDDLAQRTERFTGADLEDLTRRAGLIALRENLDAQDVTLEHFNKAFDE
IRPSVTPELEREYEAMLRTLKQEDPQRQQIGFLPRKGG
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atggcacaatcccaagacaacaccgtcaagcttcaggtcgcaaatacccgtcccgaagac
tccggaggaccattcgcgagaattacgccgaggatcatgtccgcgctcggagtcgaagaa
ggcgacataatcgagattgtcgggaaacgtcatacgggtgcgatcgctttccggggctac
gctgaggacgagggcctcaacatcattagattggacggcctgcagcgtgtgaacgccggc
gcaaccagcggcgactatgtggaggttcacaaggtggatgcgcgacctgcccagcgggtc
gttctcgcccctgcccagaagaaccttcggctgcagggatcgggcgaagcgcttcagcgt
acgttctttcgccgcccgatggctgccggggatgtgatctcgacgtccgtacaccaacgc
atcagtcgcaacgtccgcacggagcatgacatcatgcgcggcttggtcgagcttccagcc
tatggtctccaggagatccgtctggtcgtcgtgtcgacccagccgcgcggcatcgtcacg
atgggagaaaataccgtcgtcgaactgcgaccggaatacgaagagcccaaggaggccaga
cgggccgacgtcacctatgatgacatcggcggcctcggaaacgcagtcgatcaagtgcgg
gaaatggtggagctgccgcttcgacatccggagctgttccagcgccttggcatcgatccc
ccgaagggcgtgctgcttcacggccctccgggaacgggcaagacacttctggcgcgggcg
gttgcaaacgaaaccgaagctcatttctatcatatcgccgggccggaaatcatggggagc
caatatggtgaatccgaacaacggttgcgccaggtgttcgaggaggcggccaagaacgct
ccttccatcatctttctcgacgagatcgactcgatcgcgccgaaacgggagaaagtgacc
ggcgaagtggaacgccggatcgtggcacagctcttgactttgatggacggtctcgagccc
aggcagaacatcgtcgtcatcggtgccaccaatcgccgtgattcaattgacgaagcgctg
agacgtccaggccgcttcgatcgcgagatcgtcatcggagtgccggatcagaaaggcagg
cgcgaggttcttgcaatccacacgcgcggcatgcctctggcggaagacgtcgacctcgac
gaaattgcaagaaccacctacggttttgtcggcgccgatgtcggcgcgctcgcgcgcgaa
gcggcgatggattcgcttcgcaggatattgcccgacatcaatctcagagagggcatcccg
agcgaggtcctcgaaaatctgagcgtcaaccaggctgacttcttgaccgccctgaagcgg
atacagccgtcagcactccgcgaaatcatgattcaagcgcccgacgttcggtgggctgac
atcggggggctggacgacgcgcagatgcggcttcgcgaaggggtcgaattgccgttgcga
tctccgcaatcattcaagcgaatgggcattcgtccggcgaagggattcctgctgttcggt
ccgccggggaccgggaagaccttgctggcgaaggccgtcgcgcgggaagcggaggcgaat
ttcgtggcgaccaagtcgtccgacctgctttcgaaatggtacggggagtccgagcagcag
gtatcgcagctcttcgaacgggcaaggcaggtcgcgccgacagtgatctttattgacgaa
atcgattcccttgccccggctcggggtggcggcatcggcgagcccgccgtgaccgaacgc
gtggtaaacacgttgctagcggaaatggacgggttggaagatatgcaaggcgtggtcgtc
atggcggcgaccaatcggccgaacctcctcgaccccgccctgcttcgacctggccgtttc
gacgagcttgtctatgttccggttccggatgaaaagggccggcgcaagattcttggcgta
cacacgcgcaagatgccgctggccaaggacgttgacctcgacgatctcgcgcaaaggacc
gagcggttcacgggtgccgaccttgaagatctcaccaggcgcgcgggtcttatcgcgctc
agggaaaatctcgacgcccaggacgtcacgctggagcatttcaacaaggcgttcgatgaa
attcgcccgtcagtgacgcccgaactcgagcgggaatacgaggcgatgctccgtacgctg
aaacaagaagacccgcagcgacagcagatcggattcttgcctagaaaaggcggctga
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integrated database retrieval system
