Sinorhizobium garamanticum: PZN02_002540
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Entry
PZN02_002540 CDS
T09001
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
egi
Sinorhizobium garamanticum
Pathway
egi03420
Nucleotide excision repair
egi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
egi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PZN02_002540
03430 Mismatch repair
PZN02_002540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
egi03400
]
PZN02_002540
Enzymes [BR:
egi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PZN02_002540
DNA repair and recombination proteins [BR:
egi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PZN02_002540
MMR (mismatch excision repair)
Other MMR factors
PZN02_002540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
PcrA_UvrD_tudor
AAA_11
Motif
Other DBs
NCBI-ProteinID:
WEX86270
LinkDB
All DBs
Position
1:complement(2739003..2741579)
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AA seq
858 aa
AA seq
DB search
MSKGFDDIPFFDEEPAPRKPAPAGGGIAARAMAARDKAKRPDYLSGLNPEQTEAVETLEG
PVLVLAGAGTGKTRVLTTRIAHILSTGRAFPSQILAVTFTNKAAREMKERIGVLVGHAVE
GMPWLGTFHSIGVKLLRRHAELVGLRSDFTILDTDDVVRLIKQLIQAEGLDDKRWPAKQF
AGMIDTWKNKGLDPSQIPEGDARAFANGKGRELYAAYQNRLLTLNACDFGDLLLHPIRMF
RANPDVLRDYHDKFRYILVDEYQDTNTAQYMWLRLLAQRPHGKTTVARAAPAGEARASQG
WPDDVSSAPAERSRASGDSVSAKKPTQQINICCVGDDDQSIYGWRGAEVDNILRFEKDFP
GAKVIKLERNYRSTEHILGAAAHLIAHNEGRLGKTLFTERTNPDDEKVHVHAAWDSEEEA
RAVGEEIEQLQRQKHNLNDIAILVRASFQMREFEERFITLGLNYRVIGGPRFYERLEIRD
AVAYLRVLTNPSDDPAFERIINTPKRGLGDATISTLFQFARARGVPMLAAAAEIIETDEL
KPKARKALFDVVTDFRRWQTLLETTPHTELAEKILDESGYTAMWQADKSAEAPGRLENLK
ELIRSMEAFESMRGFLEHVALVMDAEQNEDMDAVSIMTLHSAKGLEFDTVFLPGWEEGLF
PHQRALDEGGRAGLEEERRLAYVGITRAKRRCHIWFVSNRRIHGLWQSTMPSRFLDELPI
DHVEVAEQDVSYGGYGRGGYGQSRFDKADPFENSYQTPGWKRAQQHRSEATRDNWGTRSG
HAVERIGYGESGPRTRMIEGELVAKSTTSEPSRFNIGDRVFHLKFGNGNIAAIEGNKLTI
DFDRAGQKRVLDGFVERV
NT seq
2577 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaggttttgacgacattcccttcttcgacgaggagccggcgccgcgcaaaccc
gcgcccgccggcggcggtatcgctgcgcgcgccatggccgcccgcgacaaggccaagcgc
ccggattatctctccggcctcaatcccgagcagaccgaggctgtcgagaccctcgaagga
ccggtgctcgtgctcgccggcgccggcaccggcaagacccgtgttctgacgacccgcatt
gcccatattctttcgaccggccgcgccttcccgtcgcagatcctcgccgtcacattcacc
aacaaggccgcgcgcgagatgaaggagcgcatcggcgtgctcgtcggccatgcggtcgaa
ggcatgccgtggctcggcaccttccactcgatcggcgtcaagctcctgcgccgccatgcg
gagctcgtcggcctgaggtcggatttcacgatcctcgacaccgacgacgtcgtgcggctg
atcaaacagctgatccaggccgaagggctcgacgacaagcgctggccagccaagcagttc
gccggcatgatcgacacctggaagaacaagggcctcgacccctcgcagattccggagggc
gacgcccgcgccttcgccaacggcaagggccgcgaactctacgccgcctaccagaaccgg
ctcctgacgctcaacgcctgcgatttcggcgacctgctcctgcacccgatccggatgttc
cgcgccaatccggacgtgctgcgggactatcacgacaagttccgctacatccttgtcgac
gagtaccaggacaccaacaccgcgcaatatatgtggctgcggctactcgcccagcggcca
cacggaaaaacaactgtcgcgagggccgcgcctgcgggcgaagcccgagccagccaaggc
tggccggacgacgtttcgtccgcccccgcggagcgcagccgcgccagcggcgacagcgtg
agcgcgaagaaacccacacaacaaatcaatatttgttgtgtgggcgacgacgatcagtcg
atctatggctggcgcggcgcggaagtggacaacatcctgcgcttcgaaaaggatttcccc
ggcgccaaggtcatcaagctcgagcgcaattaccgctcgaccgagcatattctcggcgcc
gccgcgcacttgatcgcccacaacgaaggccgcctcggcaagaccctcttcaccgaacgc
accaatccggacgatgagaaggtacacgtgcatgccgcctgggattcggaagaggaagcc
cgcgccgtcggtgaggagatcgagcagcttcaacggcagaagcacaacctgaacgacatc
gcgatcctcgtgcgcgcctcgttccagatgcgtgagttcgaagagcgctttatcacacta
gggctcaactatcgcgtgattggcggcccgcgcttttacgagcgcctcgaaatccgcgat
gctgttgcttatctgcgcgttctgacaaatccatcggatgacccggccttcgagcgtatt
atcaacactcctaagcgtggcctgggcgacgcgacgatcagcaccctctttcagttcgcg
cgagctcgcggtgttccgatgttggcagcagccgccgaaatcatcgagacggacgagttg
aagccgaaggcgcgcaaagccctcttcgacgtcgtcaccgatttccgccgctggcagacg
ctgcttgaaacgacgccgcataccgaacttgccgaaaagatcctcgacgagagcggctac
acagccatgtggcaggccgacaaatcggccgaggcgccagggcggctggaaaacctgaag
gaactcatccgctcgatggaggccttcgagtcgatgcgcggcttcctggaacacgtcgcg
ctcgtcatggacgccgagcagaacgaagacatggatgccgtctcgatcatgacgctgcat
tcggccaagggcctggaattcgacacggtgttcctgccgggctgggaggaaggcctcttt
ccccaccagcgcgcgctcgacgagggcggccgcgccggcctcgaggaagaacgccgcctc
gcctatgttggcattacccgcgccaagcgccgctgccatatctggttcgtctcgaaccgc
cgcatccacggcctctggcaatccacgatgccttcgcgcttcctcgacgaactgccgatc
gaccatgtggaagtggccgagcaggatgtctcctacggcggctacggtcgcggcggctac
ggccagtcgcgcttcgacaaggccgacccgttcgaaaactcctaccagacccccggctgg
aagcgcgcccagcagcaccgctcggaggcgacccgcgacaattggggcacccgctccggc
cacgccgtcgagcgcatcggctacggcgagtcaggcccgcgcacccgcatgatcgagggc
gaactggtcgccaagtcgaccacctcggaaccctcccgcttcaacatcggcgaccgcgtc
ttccacctcaaattcggcaacggcaacatcgccgcgatcgagggcaacaagctgacgatc
gatttcgatcgggccgggcagaagcgcgtgctggacgggtttgtggagagggtgtga
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