Sinorhizobium garamanticum: PZN02_003820
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Entry
PZN02_003820 CDS
T09001
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
egi
Sinorhizobium garamanticum
Brite
KEGG Orthology (KO) [BR:
egi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
egi03032
]
PZN02_003820 (topA)
03400 DNA repair and recombination proteins [BR:
egi03400
]
PZN02_003820 (topA)
Enzymes [BR:
egi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PZN02_003820 (topA)
DNA replication proteins [BR:
egi03032
]
Prokaryotic type
DNA Topoisomerases
PZN02_003820 (topA)
DNA repair and recombination proteins [BR:
egi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PZN02_003820 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Peptidase_M35
Motif
Other DBs
NCBI-ProteinID:
WEX87432
LinkDB
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Position
1:4030059..4032734
Genome browser
AA seq
891 aa
AA seq
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MNVVVVESPSKAKTINKYLGPGYKVLASFGHVRDLPAKDGSVRPDEDFEMSWEVDGASAK
RMKDIADAVKSSDGLILATDPDREGEAISWHVLDLLKKKKVIGDKPVSRVVFNAITKKAV
LDAMAEPRAIDISLVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVALRLVCDR
EAEIERFVTEEYWNLSALLKTPRGDEFEARLVSADGKRLQPKAIGNGDEANRLKALLDGA
SYVVESVEAKPVKRNPGPPFTTSTLQQAASSKLGFSASRTMQVAQKLYEGVDIGGETVGL
ITYMRTDGVQMAPEAIDAARLAIGSQFGDRYLPEKPRFYSTKAKNAQEAHEAIRPTDFNR
VPDQVRRFLDGDMLKLYDLVWKRGIASQMASAEIERTTAEIIADNAGERAGLRATGSVIR
FDGFIAAYTDMKEDGEQPDDGDEDGRLPEINARESLAKQKINATQHFTEPPPRYSEATLI
KKMEELGIGRPSTYAATVTTLLDRDYVTTDKRKLVPQAKGRLVTAFLESFFTRYVEYDFT
ASLEEKLDQISAGDLNWKDVLREFWKDFFSQIEDTKELRVTNVLDALNEELAPLVFPKRE
DGGDPRICQVCGTGKLSLKLGKYGAFVGCSNYPECNYTRQLSSESNGDAEASVSNEPLSL
GKDPHTGEEVTLRSGRFGPYVQRGEGKDAKRSSLPKGWTPASIDHEKAIALLSLPRDIGA
HPETGKMISTGLGRYGPFVLHNGIYANLDSIEDVFAIGLNRAVSVLADKQSKGANGSRGR
TAATALKELGEHPNGGSITVRDGRFGPYVNWGKVNATLPKGKDPQSVTVEEALALIAERA
AKGGTTKGKAPKAKSTTVKAAKTATNGAAKTAKPKTAAKAKSKAAAKAKKD
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
atgaatgttgtagtggtggaatcgccttccaaggccaagacgatcaacaagtacctgggc
ccaggctacaaggtgcttgcttcgttcggccacgtgcgggacttgccggccaaggatgga
tcggtgcgcccggacgaagacttcgagatgtcctgggaggtcgacggcgcttcagcgaaa
cgcatgaaggatatcgccgacgccgtgaaatcgtcggacgggctgattctcgcaaccgac
ccggaccgcgaaggtgaggcaatctcctggcatgtgctggaccttctcaagaagaagaag
gtgatcggcgacaagccggtcagccgcgtcgtcttcaatgcgatcacaaaaaaggccgtg
ctcgatgcaatggccgagcctcgtgctatcgacatttcgctggtcgatgcttacctcgcc
aggcgcgccctcgactatcttgtcggcttcaatctttccccggtcctctggcgcaagttg
ccgggcgcgcgctcggccggccgtgtgcaatcggtggcgctgcgtctcgtctgcgatcgc
gaggccgaaatcgagcgcttcgtcaccgaggaatactggaatctctcggcgctcctgaag
acgccgcgcggcgacgaattcgaagcacgtctcgtctcggccgacggcaagcggctgcag
cccaaagcgatcggcaatggcgacgaggccaaccggctgaaggccctgctcgatggcgcg
agctatgtggtcgagagtgtcgaagcaaagccggtcaagcgcaatccggggccgcccttc
accacctcgactttgcagcaggcagcctcttccaagcttggcttctcagcctcgcgtacc
atgcaggtggcgcagaagctttacgagggcgtcgacatcggcggagagaccgtcggtctc
atcacctatatgcgtaccgacggcgtgcagatggcgcccgaggcgatcgacgctgcgcgt
ctggcgatcggcagccagttcggtgaccggtatctgccggagaaaccccgcttctactcc
accaaggcgaaaaacgcccaggaagcgcacgaggccatccgcccgacggatttcaaccgt
gtacccgaccaggtgcgccgcttcctcgacggcgacatgctcaaactttacgatctcgtc
tggaagcgcggcatcgcgagccagatggcttcggccgaaatcgagcggacgactgccgag
atcatcgccgacaatgccggcgagagggctggtctcagggccaccggttcagtgatccgt
ttcgacggcttcatcgccgcctacacggacatgaaggaagacggcgagcagcccgatgac
ggcgacgaggacggccggctgccggaaatcaacgcgcgggagagcctcgccaagcagaag
atcaatgccacccagcacttcaccgagccgccgccgcgctactcggaagcgacgctgatc
aagaagatggaagaactcggcatcggccgtccttcgacctatgccgcaaccgttacgacg
ctcctcgaccgggactatgtgacgaccgacaagcgcaagctggtgccccaggccaagggc
cgcctcgtgacagccttcctggaaagcttcttcacgcgctatgtggaatatgatttcacc
gcgtctctggaggagaagctcgatcagatttccgccggcgacctcaactggaaggacgtc
ctgcgcgagttctggaaggatttcttctctcagatcgaggataccaaggaactgcgcgtc
accaacgtgctcgatgccctcaacgaggaactggcgccgctcgtgttcccgaagcgagag
gacggcggcgatccgcgcatctgccaggtctgcgggaccggaaaactctcgctgaaactc
gggaaatacggtgcgttcgtcggctgctccaattacccggaatgcaactacacgcgccag
ctctcctccgaaagcaatggcgacgcggaagcgtcggtgtctaacgagccgctgagcctc
ggcaaggatccgcataccggggaggaagtcacgttgcgcagcgggcgtttcggaccctat
gtccagcgtggtgaaggcaaggacgcaaagcgctccagcctgcccaagggctggacaccg
gcatcgatcgaccatgaaaaggccattgcgctgttgtcactgccgcgcgacatcggcgcg
catccggaaaccggcaagatgatctccaccggcctcggccgctacggacccttcgtgctg
cacaacggcatctacgccaatctggattcgatcgaggatgtattcgcgatcgggcttaac
cgcgcggtttcggtgctcgcggacaagcagtcgaagggcgccaacggctcccgcggacgt
accgcggccacggcgctcaaggagctcggagaacacccgaacggcggctcgattacggtg
cgcgacgggcggttcggtccctatgtaaactggggcaaggtcaacgccacgctgccgaag
ggcaaggatccgcaatccgtgaccgtcgaagaggcgctggcgctcattgccgaacgcgcc
gccaagggcggcacgacgaaaggcaaggcgcccaaagcgaagtcaacgacggtaaaggcc
gccaagactgctacgaacggcgcggcaaagaccgccaagccaaagaccgccgccaaggcg
aaatcgaaagcggccgcgaaggccaagaaggactga
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