Sinorhizobium garamanticum: PZN02_003821
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Entry
PZN02_003821 CDS
T09001
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
egi
Sinorhizobium garamanticum
Pathway
egi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
egi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PZN02_003821 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egi03019
]
PZN02_003821 (rnr)
03016 Transfer RNA biogenesis [BR:
egi03016
]
PZN02_003821 (rnr)
Enzymes [BR:
egi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PZN02_003821 (rnr)
Messenger RNA biogenesis [BR:
egi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PZN02_003821 (rnr)
Transfer RNA biogenesis [BR:
egi03016
]
Prokaryotic type
tRNA degradation factors
PZN02_003821 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
S1
CSD2
WHD_RNase_R
RNase_II_C_S1
FUSC-like
LexA_DNA_bind
Motif
Other DBs
NCBI-ProteinID:
WEX87433
UniProt:
A0ABY8DET5
LinkDB
All DBs
Position
1:4032737..4035106
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AA seq
789 aa
AA seq
DB search
MTRIPRDPTARPGKGAGKKNGRAAKTTPAAERETIIHGAVPPRDVLMRFIAENPQQASKR
EIAKAFGLKGEARVELKALLRSLEEDGLVEKKRKSLVRPGALPPVTVLDITIRDIDGELI
GRPAEWLDDDGVAPAVLIKQSAVGKAKGKAPVGGLGDRVLAKIFPSKDRGGPAYTARIIK
VLDKRKDAVLGVFRPTHGGGGRLMPIDKRGEEILVDPDFTGNAQDGDLVEVHLARLGRYG
LPRAQVQNVIGSVASEKAISMIAIHAHGIPHVFPERVLNEAEAARPATMEHREDWRSLPL
ITIDPADAKDHDDAVYAEPDPSPDNPGGVIVTVAIADVSWYVQPKSALDLEALKRGNSVY
FPDRVVPMLPERISNDLCSLKEGVDRPALAVRMRFSKEGRKAGHTFHRIMMRSAAKLSYS
QAQAAIDGAPDDKTGSILETILKPLWEAYRTLTRGRDRRQPLELNMPERKIILKPDGTVD
RVFVPERLDAHRLIEEMMIQANVAAAETLEQKKQALIYRVHDQPSLAKQETLREFLATLD
ISLVKGGNMRSNHFNGVLSKAEGKPYETMVNEMVLRSQSQAIYSPENIGHFGLNLMKYAH
FTSPIRRYADLVVHRALVTALGLGAGGTTPQEEGALDDIAAEISTFERRAMAAERDTIDR
LIAHHLHGRIGEEFDGRVSGVTKAGLFVTLPAYGADGFIPISTLGRDYYIYDEAHQALSG
EKSGLGYRLGDPVRVKLEEAVPLAGALRFEMLSEGRKMPTATRSFHKAGRRDRPGAGKRP
GTRAPRGRR
NT seq
2370 nt
NT seq
+upstream
nt +downstream
nt
ttgaccagaatcccgcgcgacccgaccgcacggcccggaaagggcgcaggcaagaagaac
ggccgcgcggccaagacgacacctgccgccgaacgggaaacgatcattcacggcgcggtt
ccgccgcgcgatgtgctgatgcgtttcatcgccgagaacccgcagcaggcctcgaagcgg
gaaatcgccaaggccttcggcctgaaaggagaggcacgtgtcgaactgaaggcactgctg
cgctcgctggaagaggatggactggtcgaaaagaagcgcaaatcgctcgtccgtccgggt
gccctgccgcccgtcaccgtcctcgatatcacgatacgcgacatcgatggcgaattgatc
ggccggccggcggagtggctggatgacgacggcgtcgcgcccgcggttcttatcaagcaa
tccgctgtcggcaaggcaaaaggcaaggcgcccgtcggcggtctcggcgaccgggtattg
gcgaagatatttccctcgaaggaccgcggcggtcccgcctatacggcgcgcatcatcaag
gtcctcgacaagcgcaaggacgcggtcctcggcgtctttcgcccgactcatggcggcggt
gggcggctgatgccgatcgacaagcgcggcgaagaaatcctggttgacccggatttcacc
ggtaacgctcaggacggcgatctggtggaggtgcatctagcccgcctcgggcggtatgga
ctgccccgcgcccaggtgcagaacgttatcggctccgttgcgtcggagaaggcaatctcg
atgatcgccatccatgcgcatggaattccccacgtctttcccgagcgcgtgctgaacgag
gccgaggcagcacgcccggcgacgatggaacaccgcgaggactggcgctcgttgccactg
atcaccatcgatccggccgacgccaaggaccatgacgacgccgtctacgcggagcccgat
ccctcgcccgacaatccgggcggcgtgatcgtcaccgtcgcgattgccgatgtctcctgg
tatgtccagccgaagtccgctctcgacctcgaagcgttgaagcgcgggaactcggtctat
tttcccgaccgggtcgtgccaatgctgcccgagcgcatttccaatgatctatgttcgctg
aaggaaggcgtcgaccgtcccgcgctcgctgtccggatgcgcttctcgaaagagggtcgc
aaggccggacacacgttccaccgaatcatgatgcgcagcgccgccaagctttcctacagc
caagcccaggccgcgatcgacggggcgccggacgacaagaccggatcgatcctggaaacg
atcctcaagccgctctgggaggcttaccgcacgctcacgcgcggacgcgaccggcgtcag
ccgcttgagctcaacatgccggagcgcaagatcatcttgaaacccgacggcacagtcgac
cgcgtcttcgtgccggaacgcctcgacgcgcacaggttgatcgaggaaatgatgatccag
gccaatgtcgccgcggcagagacgctggagcagaagaagcaggcgcttatctatcgcgtt
catgatcagccgtcgcttgcaaaacaggagacgcttcgcgaattcctggcgacgctcgac
atctcgctcgtcaagggcggcaacatgcgttccaaccacttcaacggggtactctccaag
gcagagggcaaaccttacgagaccatggtcaacgaaatggtgctgcgttcgcaaagccag
gcgatctacagcccggaaaacatcggccatttcggcttgaacctgatgaagtatgcccac
ttcacctctcccatccgccgctatgccgatctggtcgtgcatcgcgccctggtcaccgcg
ctcggcctcggcgcgggcggcacgacgccgcaagaggaaggtgcgctcgacgatatcgcc
gccgagatttccaccttcgagcggcgcgcgatggcggccgagcgcgatacgatcgatcgg
ttgatcgcgcatcacctgcacggacgcatcggcgaggaattcgacgggcgcgtctccggc
gtcaccaaggcgggactttttgtcaccctacctgcctatggtgccgacggctttatccct
atatctacgctcggacgcgactattacatctatgacgaggcccaccaggccctgtccggc
gaaaagtcggggctcggctatcgtcttggagatccggtacgcgtcaaactggaagaggcc
gtgccgctcgccggtgcgctccgcttcgagatgttgagcgaagggcgaaagatgccgacc
gcaacacgctccttccataaggccggtcgccgcgaccgaccgggcgcaggcaagcgaccg
ggaacgcgggcaccgcgaggcaggcgatag
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