Sinorhizobium garamanticum: PZN02_005228
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Entry
PZN02_005228 CDS
T09001
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
egi
Sinorhizobium garamanticum
Brite
KEGG Orthology (KO) [BR:
egi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
egi03000
]
PZN02_005228
Transcription factors [BR:
egi03000
]
Prokaryotic type
Helix-turn-helix
Other families
PZN02_005228
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
AAA_lid_14
GAF
HTH_8
HTH_23
HTH_29
AAA_5
HTH_IclR
HTH_30
HTH_28
HTH_1
AAA
AAA_16
HTH_Tnp_ISL3
HTH_AsnC-type
HTH_17
IclR_C
HTH_24
Mg_chelatase
Sigma70_r4_2
MarR_2
PAS_4
HTH_50
TsaE
HTH_20
TIP49
Motif
Other DBs
NCBI-ProteinID:
WEX89896
UniProt:
A0ABY8DG66
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All DBs
Position
2:complement(1360222..1362108)
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AA seq
628 aa
AA seq
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MFSHSDHIREIERVGRGLPSSRDAMVVKSWRRCLEHHHLDPAQACEAYIVPETRLKEHRQ
QSEDLITIARSGLEHLFRQVAGQNYVLLLSDRQGVTVEFLGDPLFNNSLRKAGLYLGSEW
SEWRAGTCAVGACIETGEALTIHQTDHFDNTHTPLSCTAAPIYDVHGQLSAVLDISLLSS
PILKASQNLALHLVTASARRIELANLMAQARHQWVLRFSRSPEFLDVDPEAAISIDDLGR
IAGMTHGGAKILARSTGLDWRDPRLLIGEPVSRFLDLEVDDLPDLTRRRPTQERLVFARD
GNALFAHAIEPHSGIRAPGVLRAQIPPPLRRLGGDAPEIVALQAKAAKLARTGLPILIQG
ETGTGKEHLARAIHEGSGLTGRFVAINCAAIPEQLIESELFGYLPGAFTGASAKGRKGLI
EQADGGTLFLDEIGDMPLALQSRLLRVLAEREVLPVGGTVPRAVQIRIVSASHRPLQTLV
SQGAFREDLYYRLNAATLSLPALRDRPDFDWVLEQILKRHSDAAGELTLSPAARVALKAH
DWPGNIRELDNAIAVATALAEGSVIDVCDLPDYLIAQAEPDDAGDAGAALSLMLDACNWN
VSEAARRLGLDRSTVHRQIRRYHLKQKH
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgttttcacattccgaccacatccgcgaaatcgagcgcgtcggccgtggccttccgagc
agtcgcgacgctatggtcgtcaaatcctggcggcgctgcctggaacatcaccacctcgat
ccggcgcaggcttgcgaggcctatatcgtaccggagacgcggctcaaggagcatcgccag
cagtcggaagacctgatcaccatcgcccgctccgggctcgagcatctgttccggcaggtg
gcggggcagaactatgtgctgctgctctccgaccggcagggcgtgaccgtcgagttcctt
ggcgatccgcttttcaacaacagccttcgcaaggcgggcctctatctcggttccgaatgg
tccgaatggcgcgccggaacctgcgccgtcggcgcctgcatcgagacaggcgaggcgctg
acgatccaccagaccgaccacttcgacaacacgcacacgccgctctcctgcacggcggcg
ccgatctacgacgttcacggccaactttcggccgtcctcgacatctcgctcttgagttca
ccgatcctgaaggcaagccagaacctggcgcttcatctggtcaccgccagcgcaaggcgg
atcgaactcgccaatctcatggcccaggcgcggcatcaatgggtgctgcgtttctcgcgt
tcgccggaattcctcgacgtcgacccggaggcggcgatctcgatcgacgacctcgggcgg
atcgccggcatgacccacggcggggccaagatcctggcgcgctcgaccgggcttgactgg
cgtgatccgcgcctgctcatcggcgagccggtatcgcgcttcctcgacctggaagttgac
gaccttcccgatctcacgcgccgccggccgacgcaggaacggctcgtcttcgcccgcgac
ggcaatgcgctcttcgcccatgccatcgagccgcattccggcatccgcgcgccgggcgtc
ttacgcgcgcagatcccgccgccgctgcgccggctcggcggcgacgcgcctgaaatcgtc
gcgttgcaggcaaaggccgccaaactcgcccgcaccggactgccgattctcatccaaggc
gagaccggtacgggcaaggaacacctggcgcgcgccatccacgagggcagcggccttacg
ggccgcttcgtcgccatcaattgcgcggcgatccccgagcaactgatcgagagcgaactc
tttggctatctgccgggcgcgttcaccggcgcgtcggccaaaggccgcaagggcctgatc
gaacaggcggacggcggcacgctctttctcgacgagatcggtgacatgcctcttgcgctg
cagagccgtctgctccgggtgctggccgagcgcgaggtgcttccggttggaggcacggtg
ccgcgcgcggtgcagatccggatcgtttcagcctcgcatcggcctttgcagacactggtc
tcgcaaggcgcctttcgcgaagatctctattaccggctcaatgccgcgacgctctcactg
ccggcgctgagagacaggccggacttcgattgggtgctggagcagatcctgaagcggcat
tccgatgccgccggagaactcacgctctctccggccgcgcgcgtggcgttgaaggcgcat
gattggccgggaaacattcgcgaactcgacaacgccatcgcggttgcgaccgcgctcgcc
gaaggctctgtcatcgacgtttgcgatctgccggactatctcatcgcacaggccgagccg
gacgatgcgggcgacgctggcgcagcgttgagcctgatgctcgatgcctgcaactggaat
gtctccgaggcagcgcgaaggctgggcctcgatcgctcgacggtgcatcggcagatcagg
cgctaccacctcaagcagaagcactga
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