Sinorhizobium garamanticum: PZN02_006221
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Entry
PZN02_006221 CDS
T09001
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
egi
Sinorhizobium garamanticum
Pathway
egi02020
Two-component system
egi02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
egi00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PZN02_006221 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PZN02_006221 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
egi03021
]
PZN02_006221 (rpoN)
Transcription machinery [BR:
egi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PZN02_006221 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Nol11_C
Motif
Other DBs
NCBI-ProteinID:
WEX91440
LinkDB
All DBs
Position
unnamed:complement(394489..396096)
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AA seq
535 aa
AA seq
DB search
MALSASLRLRQSQSLVITPQLMQSIQLLQMTHLELTQFIAQEVEKNPLLECQSGDEMVIP
QDRAGREEAASLSVDTGSDTGSDADEAGTQRDLYDSATSSTSERLSEQLDADFANVFPDD
TTPQRADAPELLGQWKSMPGGGDGDNGEGYDLDDFVAGRKTLRETLLEQLPFALGTPGDR
LIAQHLIDQLDEAGYLHADLAETAARLGAATEDVTRVLLVLQQFDPPGVFARSLSECLAI
QLRARDRLDPAMDALVANLELLARRDFASLKKICGVDEEDLIDMLAEIRKLDPKPGTSFE
TCVSEAIIPDVTVRAAPNGSWLVELNPDALPRVLVNHDYFAEISRGTQKNSADQAFLSEC
LQSANWLTRSLDQRARTIMKVASEIVRQQDAFLLHGVDHLRPLTLKIIADAIKMHESTVS
RVTSNKYMLTPRGLFELKYFFTVSIGSAENGDAHSAESVRHRIRTMIAQETADALLSDDD
IVDMLREAGIEIARRTVAKYREAMNIPSSVQRRREKHALAKASAFCSSSAGWERG
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atggccttgtccgccagccttcgtctgcgccagtcacagtcgctggtcatcacgccgcaa
ctgatgcagtctatccagctgctgcaaatgacccatctggagctgacacagttcatcgca
caggaagtcgaaaaaaatccgctgctcgaatgtcaatccggcgatgaaatggtgatcccg
caggatcgcgccggccgcgaggaagcggcatccctctccgtcgacacgggcagcgacacc
ggaagcgacgcggacgaggctggcacccagcgcgacctttacgatagcgccacatcgagc
accagcgagaggctcagtgaacagctcgacgctgacttcgcaaacgtcttcccggacgac
acgacgccgcagcgcgccgatgctccggagttgctcggccagtggaaatcgatgcccggc
gggggcgacggcgacaatggcgagggatacgatctcgacgattttgtcgccggccgaaaa
actctgagggagacccttctcgaacaacttcccttcgcgctcggcacgcccggagaccga
ctgattgcccaacatctcatcgaccagctcgatgaagcaggctacctgcacgctgacctg
gcggagacggcggccaggctcggcgcggcgacagaagacgtgacgcgcgtgctgctcgtc
ctgcagcaattcgatccgccgggcgtcttcgcacgcagcctcagcgaatgtctcgccatt
cagctgcgcgcgcgcgaccgcctcgatccggcgatggacgcgctcgtcgccaatctggag
cttttggcgcgccgcgatttcgccagcctcaagaaaatctgcggcgttgacgaggaagat
ctgatcgacatgctcgccgaaatccgcaagctcgacccgaaaccgggcaccagcttcgaa
acctgcgtcagcgaggcgatcatacccgacgtcaccgtacgcgcggcgccgaacggtagc
tggctggtcgaactcaatcctgacgccctgccccgggttctcgtcaatcacgactatttc
gccgagatctcgcgcggcacccagaaaaacagtgccgaccaggcctttctcagcgaatgc
ttgcagagtgccaactggctgacgcgcagcctcgaccagcgcgccaggacgatcatgaag
gtggcgagcgagatcgtcaggcagcaggacgccttcctgctgcacggtgtcgatcatctg
cggcccttaaccctcaagatcatcgcagacgcgatcaagatgcatgaatcgacagtgagc
cgcgtcacctcgaacaaatacatgctgacgccgcgcggactgttcgaactgaagtatttc
ttcacggtgtcgatcggctccgcggaaaacggcgacgcccattcggcagagtccgtccgt
catcgcatccgcacgatgatcgcccaggaaacagccgacgccttgctttctgacgatgac
atcgtcgacatgctccgagaggccggcattgagatcgcgcgtcgtaccgtcgcaaaatat
cgcgaggcgatgaacatcccgtcctccgtccagcggcggcgtgaaaagcacgctctggcc
aaggcttccgccttctgttcgtctagcgcgggatgggaaaggggataa
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