Echinococcus granulosus (hydatid tapeworm): EGR_00038
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Entry
EGR_00038 CDS
T05553
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
egl
Echinococcus granulosus (hydatid tapeworm)
Pathway
egl03020
RNA polymerase
egl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
egl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EGR_00038
09124 Replication and repair
03420 Nucleotide excision repair
EGR_00038
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
egl03021
]
EGR_00038
03400 DNA repair and recombination proteins [BR:
egl03400
]
EGR_00038
Enzymes [BR:
egl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EGR_00038
Transcription machinery [BR:
egl03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
EGR_00038
DNA repair and recombination proteins [BR:
egl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
EGR_00038
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_7
RNA_pol_Rpb1_4
CggR_N
Motif
Other DBs
NCBI-GeneID:
36335753
NCBI-ProteinID:
XP_024355965
UniProt:
U6J1X0
LinkDB
All DBs
Position
Unknown
AA seq
1862 aa
AA seq
DB search
MDGGKPKLGGLMDPRQGCVDRASICQTCSGNTASCPGHFAHVELAKPVFHIGFLKKTLKI
LRCVCFYCSKLLVDTQIPRIADIQRKTKNDPRRRLAFMYEECKSRTTCLPPEDLTNGDQE
IKLESKTTRTGCGRYQPNFRRVGLEMTAEWKVQNEVSQEKKTSLTAERVLEVFKRISDED
CIALGLNPQYARPDWMICTVLPVPPLAVRPAIVMYGAARNQDDLTYKLADIVKANNQLRR
DEQNGAAAHILSEDVRILQYHVATLIDNDIPGLPKAIQKSGRPLKSIKQRLKGKAGRIRG
NLMGKRVDFSARTVITADPNLCLDQVGVPRTIAQNLTYPERVTQSNIDFLQKLVQNGTMY
PGAKFIVRENGDRIDLRYHPKVADLTLQVGYIVERHMLNDDFVVFNRQPTLHKMSMMCHR
VRVLPWSTFRLNLSVTSPYNADFDGDEMNLHLPQSVETKAEISQLARVPRLVVTPQANKP
VMSIVQDSLTAAYKMTQRDVFINRADMMNLLMYLPTWSGRMPKPAIYKPQRLWTGKQLFS
LIIPRRVNCIRTHSTHPEGEDDGPYRWISPGDTKVLIDDGDLVAGILCKKTLGSASGSLI
HLVALEHNFEVVGMFFNNIQTVINNWLLIEGHTIGIADTLYDQATRKQIGETITKAKDAV
FDIIDQAHNYDFQPLPGNTLRQTFENHVNKILNEAREKTGGCAQKSLSKYNNFNIMVVAG
SKGSRINISQVIACVGQQNVEGKRVPFGFRHRTLPHFIQDDYGPESRGFVENSYLAGLTP
TEFFFHAMGGREGLIDTAVKTAETGYIQRRLMKAMESVMVKYDGTVRNQINQLIQLRYGE
DGLDAAHVEFQRLPTFKPSDEAFEHNFRFDLSNERALRRCMPDDLVRSLATDPETQAELD
AEWDELCNDRKVLRSIITKPEDRVVLPCNIGRLIWNAQKLFEIDPLSKTNLHPRQVVEQV
RETCKRLVVVPGEDALSKEANSNAVLLMSCLIRSMLCTKKVIQEHRLTYDALDWVLGEIR
NRFQQAQIHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKR
PKTPSMTIYLTGQAARDAEHAKDVVARLEHTTLRKLVNCTSIYYDPDPKNTVVKEDRDWV
STYYDLPDFNMDAISSWMLRIELARKQMTGKKLTMEQIADKITKSFGNDLICHIPDDNLK
LAMRIRIMNSDLEQNMKEADTTTDKMEDDTFLRFIEANLLTDITLQGIPQISKVYMHQPK
TTDKQRVIIRKDGSFNCVTEWILETDGTCLMKVLAQRDVDSARTVSNDIVEIFEALGIEA
VRKAIETEMHDVISFDGSYVNYRHLALLCDVMTVKGHLMAITRHGINRLDTGALARCSFE
ETVDILMEAASHAECDPLQGVSENVMLGQLAKIGTGSFDLLLNSAKCQEAQPIPIVGSVG
LFNGGIFDVSAGAWASPRFGLVTPGDSLSGLTGGPGGSTPWDTAASPAGSLIEASPYVSR
LGGMTTPHEAMFSPQAYRHDLPYSPGRSPQLDSPRTPDVLFSPAAMSGFASPLSYAGTPQ
TEIGSPGSSPGHSGSGSSSSFGYASRLSLGADASYSPLSKPTYGGTGSSSSLSLGADSSS
PSYSGQQFYSPASVGYQPRSPQRNVSSFGFGPSVSPSGSSPNSLDSYSPGSPAMPGVGMS
SSGRAASSWITGGSDTPSGFSPSIDSGSSLGNSLSNFNSTHPSPPQMYYGSPSAPRYSPQ
PSFGGSSMLSYSPHLGVPSSPISGASGGLSGPSHSPLSYPATPNYPLSSHGGAAGTGGSS
SISGLGLTGTSYGTSYCPSATFSPSSSFQSSSSHYMMTSRRPTSPSPSSPNSYSPAPSSE
HR
NT seq
5589 nt
NT seq
+upstream
nt +downstream
nt
atggatggaggaaagcccaaacttgggggtctgatggatcctcgccagggatgtgttgac
cgtgcctcaatctgccaaacatgcagtggtaacacagcttcatgtcctggccactttgct
catgttgagctcgcgaagcctgtgtttcatatcggcttcttaaagaaaacgctaaaaatt
ctccgttgtgtttgtttttactgttccaaactcctcgtggacactcaaattccgcggata
gctgatattcaacgaaagaccaagaatgatcctcgtcgacgccttgcttttatgtatgag
gagtgtaagtctcggaccacctgtcttcctccagaagatctcactaatggggaccaggag
ataaaacttgaaagcaagactacacggactggttgcggacgttaccaaccaaatttccga
cgtgtaggcctggaaatgaccgcagaatggaaggtccaaaatgaggtctctcaagagaaa
aagacaagcttaactgctgaacgtgtcctagaagtttttaaaagaatatctgatgaagat
tgcatagcccttggtttaaatccgcagtatgcccgtccagattggatgatctgtaccgtt
ctccccgttcctcctcttgcagttcgtcccgccatcgtgatgtacggtgcagcgagaaat
caggatgatttaacttataaattggccgatatagttaaagctaacaatcagttgcgccga
gacgaacaaaatggagctgcagctcacattttgtcagaggatgtgaggattttacaatat
catgtggctaccctgattgataacgatattcccggtctgccaaaggctattcagaagtct
ggaagacctctaaagtcaatcaaacaacgtctaaagggaaaggccggacgcatacgaggt
aatttgatggggaaacgtgttgatttctctgctcgaactgttataactgctgatcctaat
ttgtgtcttgatcaagttggtgttccccgaaccattgcccagaacctaacatatccagaa
cgagtcacacaatctaacatagatttcctgcagaagttagttcaaaatggaaccatgtat
cctggagccaagtttattgtccgagaaaatggtgaccgaatcgaccttcgatatcatcca
aaggtagctgatttgactctccaagttggatacatagttgagcgccatatgctaaatgat
gactttgtcgtttttaatcgtcaacccaccttgcacaaaatgtccatgatgtgccaccga
gtgcgcgtcttgccgtggtcaacatttcgtttgaatttatctgtcacttcaccgtacaac
gctgatttcgatggtgatgaaatgaatcttcatttacctcagtctgtcgaaacgaaagct
gaaatcagccaactcgctcgagttcctcgccttgttgtaactccccaggctaataaaccc
gtcatgagcatcgtacaggattcacttactgctgcctacaaaatgactcaacgtgacgtt
ttcatcaaccgggctgatatgatgaatctcttgatgtatcttcccacctggagcggtcgc
atgcctaaacctgctatttacaaaccgcagcgactctggactggcaaacagctctttagt
ttaattataccccgtcgggtaaactgtattcgaacacacagtacccacccagaaggtgaa
gacgacgggccttaccgttggatttctccaggtgatacgaaggttttgattgacgacggc
gatcttgttgcggggattctgtgtaaaaagacgcttggctccgcttccggttctcttatt
cacctggtggctctggagcataattttgaagtggttggtatgtttttcaacaacatacag
accgttattaacaactggttgttgattgagggccatacgataggcattgcagatacgctt
tatgatcaagcaactcgaaaacaaattggtgaaaccatcacgaaggccaaagatgctgtt
ttcgatattatagaccaagcacacaattatgattttcagcctctgcctggtaacacactg
cggcaaacttttgaaaatcacgtcaataagattctaaatgaggctcgtgaaaagaccggt
ggttgcgcacaaaaatctctctcaaagtataataatttcaatattatggttgttgcgggc
tcaaaggggtcaagaataaacatttctcaggttatcgcttgtgtcggacagcagaatgtc
gaaggcaaacgcgtgccattcggttttaggcaccgcactcttccccattttattcaagac
gattacggtcccgaatcaagaggttttgtcgagaactcctacctagctggtcttacacca
actgaattcttctttcacgcaatgggtggtcgtgagggtttgattgatacggctgtcaag
acagccgaaactggttacatccagcgtcgtctaatgaaggccatggaatccgtaatggtt
aagtacgatggtacagtgcgaaatcagatcaatcaacttatccagttgcggtacggagaa
gatggcttggatgccgctcacgttgaattccaaagattgccaacctttaaaccatcagat
gaggcgtttgagcacaactttcgctttgatttgagcaacgagcgtgctcttcgacgttgt
atgcccgatgatttggttagaagcctagcaacggacccggaaactcaggctgaattagac
gctgaatgggatgagttgtgcaatgaccgcaaggtattacgatcaatcattaccaagcca
gaggatcgcgtcgtcttgccttgtaacatcgggcgtcttatttggaatgctcaaaaactg
tttgaaattgatcctctttctaaaacgaatcttcatccacggcaggtagtggaacaggtg
cgggaaacgtgtaagcgtttggtggtggtgccaggtgaagatgcactaagcaaagaagct
aattcgaacgctgtcttgctcatgagttgccttattcggtcaatgctttgtacaaagaag
gtaattcaggaacatcgcttaacttatgacgctctggactgggtgctgggcgaaattcga
aatcgcttccaacaggcacagattcaccccggtgaaatggtcggtgccctggcggcgcag
tcgctcggtgagccggccacgcagatgacactcaacactttccactatgctggtgtctcg
gctaagaacgtgacccttggcgtgcctcgactaaaagaaattataaatgttagtaaacgt
cccaaaactccctccatgacaatttacctaaccggacaggcggctagggatgccgaacac
gcgaaagatgtagttgctcgcctggagcacacaacactccgcaaactagtaaactgtaca
tcaatttactacgatccagatccaaagaataccgtcgtaaaagaagacagggattgggtt
tccacctattacgatttgcctgatttcaacatggatgctataagttcttggatgctcaga
atcgagcttgcgcgtaaacaaatgacgggtaaaaagctgacaatggaacaaattgccgac
aaaattacaaagtcctttggcaacgatcttatctgccacattcctgatgataatttgaag
ttggcaatgcggatacgaattatgaacagtgatttggaacaaaacatgaaggaagctgat
acaactacggataaaatggaagacgatactttcctgcgtttcattgaggctaatctgctt
acagatatcacattgcaaggcattcctcaaatatcaaaggtttatatgcatcagcctaag
actacagataaacagcgtgtcattattcgtaaagatggcagttttaattgtgtcactgaa
tggattcttgagacagatggcacatgtctaatgaaggtgcttgctcagcgggatgtcgac
tcagcacgcacagtgagtaacgacatcgtggaaatttttgaggctctgggcattgaggct
gttcgtaaggcaattgagacagagatgcacgatgtgatatcctttgacggttcttacgtt
aattaccggcacttggcactactttgtgatgtcatgactgtgaagggccatttgatggct
attactcgtcatggaataaaccgtcttgataccggcgctctggcccgttgcagctttgag
gaaacggtggatatactgatggaggcggcgagtcatgctgaatgcgatcccttgcagggt
gtgtcggagaatgtaatgctaggtcagcttgcgaaaatcggtacgggatcattcgacctc
ctcctcaactcggctaaatgtcaagaggcccagcccattccgatcgtcggatctgtcgga
ctgtttaacggtggcattttcgacgtttccgccggagcttgggccagtcctcgttttggt
ttggtgacacctggagatagtctttccggcttgaccggtggtcctgggggcagcaccccg
tgggatactgctgcttctcccgcaggatctcttattgaggcatcgccttacgtcagtcgc
ctgggtggcatgactacacctcacgaggcgatgttttctccacaggcttacagacacgac
ctcccatattcgccaggtcggagtccacagctcgatagtccaagaacacctgatgtgctt
ttttcgccggcagctatgtcaggatttgccagcccactgtcgtacgctggaactcctcaa
actgaaattggttcaccaggatctagtccaggtcattctgggagcgggagtagcagttcc
tttggatatgctagtcgtttgagcttgggtgctgatgctagctattctccattatcaaag
ccaacctacggtggcactggtagttcatcgagtcttagtcttggagccgacagcagttca
ccaagctactccggacagcagttctactcacccgcctcggtgggttatcaaccgcgctct
ccacaacgcaatgtatcgagtttcggttttgggccatccgtatctccctcggggtcatct
ccaaacagtcttgattcctatagtcccggaagtcctgcaatgcctggtgtgggtatgagt
tcatctggacgggcggcttctagctggattacgggtggctccgacacgccgagtggattc
tctccgagcatcgattcgggatcctctctgggaaacagtttgtctaacttcaactctacc
caccctagtcctccacaaatgtactatggttcgccttcagctccacgatacagtccacag
ccatcatttggtggttcctcaatgctctcctactctccacacttgggagtcccgagctct
cctatcagcggtgcctctggagggctaagcggacctagtcactccccactttcttatcct
gcgacacccaactatccgttgtcctcacacgggggtgcggcagggactggaggcagctca
agtatcagtggtctcggcctaaccggcacaagttacggtacatcctattgtccttcggca
acttttagcccctccagttctttccaaagttcgtcctcgcactatatgatgacctctcgt
cgaccaacctctccttcccccagcagtcctaatagctactcaccagccccgtcatctgaa
catcgataa
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integrated database retrieval system
