KEGG   Echinococcus granulosus (hydatid tapeworm): EGR_01131
Entry
EGR_01131         CDS       T05553                                 
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5
  KO
K12624  U6 snRNA-associated Sm-like protein LSm5
Organism
egl  Echinococcus granulosus (hydatid tapeworm)
Pathway
egl03018  RNA degradation
egl03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:egl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    EGR_01131
  09123 Folding, sorting and degradation
   03018 RNA degradation
    EGR_01131
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:egl03019]
    EGR_01131
   03041 Spliceosome [BR:egl03041]
    EGR_01131
Messenger RNA biogenesis [BR:egl03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     EGR_01131
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     EGR_01131
Spliceosome [BR:egl03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    EGR_01131
SSDB
Motif
Pfam: LSM DUF4438 KOW7_SPT5
Other DBs
NCBI-GeneID: 36336846
NCBI-ProteinID: XP_024355199
LinkDB
Position
Unknown
AA seq 192 aa
MIMQISNNFLLKQSWVSSCFWPLAFITTFYRRPFQGHHGMESAIGSTHLLPLELIDKCVG
SRIHIIMKNDKEMVGTLLGFDGYVNMVLVDVTQFEFTAKGKRITKLAHILLNGSHIAMMV
PGGEGPEVRATPGQWSSGDRCPHHHRHDIAVPIGRSQESTSLVAANQQGCPVEDLRKQGK
SPILRLPHSPGG
NT seq 579 nt   +upstreamnt  +downstreamnt
atgattatgcaaatttccaataactttctcctaaagcaatcatgggtttcctcctgtttc
tggcctttggcgtttataacaaccttctataggcgcccattccaaggacaccacggaatg
gaatcagccatcggttcgacacacctacttcctctggagttaatcgacaaatgtgttggg
tccaggatacacatcataatgaagaatgacaaggaaatggtcgggaccctcctcggtttt
gacggctatgtcaacatggtgctggtggatgtcacacagttcgagttcactgcgaaaggc
aagcgaattacaaaactcgcccatattctccttaatggcagccacatagctatgatggta
ccgggtggggaaggccccgaggtacgtgcaactcccggacaatggagctccggggatcgc
tgtcctcatcaccatcgtcacgacatcgcagttccgatcggaaggtctcaggagagcact
tccttagtcgcagcaaaccaacaaggatgtcctgttgaggatcttcgtaagcaaggaaag
tctcccatcctccgtttgccacatagtcccggcggatga

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