Echinococcus granulosus (hydatid tapeworm): EGR_02546
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Entry
EGR_02546 CDS
T05553
Name
(RefSeq) Superkiller viralicidic activity 2-like 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
egl
Echinococcus granulosus (hydatid tapeworm)
Pathway
egl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
egl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EGR_02546
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egl03019
]
EGR_02546
03041 Spliceosome [BR:
egl03041
]
EGR_02546
03009 Ribosome biogenesis [BR:
egl03009
]
EGR_02546
03016 Transfer RNA biogenesis [BR:
egl03016
]
EGR_02546
Enzymes [BR:
egl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EGR_02546
Messenger RNA biogenesis [BR:
egl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
EGR_02546
Spliceosome [BR:
egl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
EGR_02546
Complex C
U4/U6.U5 tri-SnRNP related factors
EGR_02546
Ribosome biogenesis [BR:
egl03009
]
Eukaryotic type
Pre-60S particles
Helicases
EGR_02546
Transfer RNA biogenesis [BR:
egl03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
EGR_02546
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
YodE
AAA_22
Motif
Other DBs
NCBI-GeneID:
36338261
NCBI-ProteinID:
XP_024353946
LinkDB
All DBs
Position
Unknown
AA seq
1094 aa
AA seq
DB search
MSNLFGIELEALVSAFQTPESPKVFGTMPATPSTNRPAAPFPTMFPLPKTRKSRYKLPKL
KTISIPTEEGCLHEVVLPVGLDHFNPLRPMSQTPAKTYTFRLDPFQRQAILCVENDQSVL
VSAHTSAGKTVVAEYAIARGLANRQRVIYTTPIKALSNQKFREFLVEFKDVGLMTGDITI
NPESTLLIMTTEILRGSEVTRELGWVIFDEIHYMRERERGVVWEESIILLPDSVSQVFLS
ATIPNARQFAEWVAFLHRRPCHVIYTDYRPTPLQHYVFPCGGDGIFLREFLEANFNSALD
VIRGAAGNAQSDTAMRGRRGGSLRAATYCYKLVKLVMDQELEPLIVFSFSKKDCEFYASQ
LSQVDFNGDKDKAAVDLIVRNALESLSPEDQKLPQILSTVPILRRGIGFHHGGLLPILKE
IVEILFAEGYLKVLFATETFAMGLNMPARTVLFTATRKFDGQNFRHISPGEYIQMSGRAG
RRGKDDRGTVILMLDDTVTPDAAKQLLLGMPDPLNSAFTLSYNMVLNLLLVEDINPQIML
EKSFFQFQNYASIPALERSESVEIASLDAEFKGIELPEDVNIEQLSNILQLRQGVETLER
EKWQLSMKFKYVSPFLQPGRLLRVESADGVDYGWAIVLNLRRFKQRNPYGGGVISDTVMV
DVLVRVATASPDTVTIEPSPPSLTSFKPLDDFDLLVAAEGKIEEVTEPLSKKRKRTSEGT
PKASKQNQAPTSPVSTAIIASVPLDCLREMSSVCLNFSFIDGADTKDPTALVEKVAKLPS
SMRLHFWEGIHRARSKLGGELPLIDPVKDMGVKDSRLATCLKNIHLLQARVTLNPLSGRK
DLDYLLHTHKKRIAKYLELRVVHEELDQKESLLQLDELHSRKRVLRRLGFSTEDDVIHLK
GRIACEISSGDELMLTELLLDGFFSDLSADQIAGALSCFVTEKSSTKEPPKLRPDMEAAL
NTIRSKARYLATVAEESRLHSGPMASTPGGPIKGDGNIFAEGGRSAVDDYVAKFSGEMME
IVRSWAQGVSFAELCQMTPLFEGNVIRCLRRLEELLRQMHEAAKVAGNADLENKFVKAMT
LIKRDIVFAASLYL
NT seq
3285 nt
NT seq
+upstream
nt +downstream
nt
atgagcaacttgtttggtattgagttagaggccttggtctccgctttccagacaccagaa
agtccaaaagtattcggtactatgcctgccactccgtccacgaatcgtcctgctgctcca
tttcctacgatgtttccactccctaaaacgcgcaaatcgagatataaattgcctaaactg
aagacgatatccattcctacggaagaagggtgccttcacgaggtcgttcttcccgttggc
ttggatcatttcaatccgctgaggccgatgtcgcagacacctgccaagacttatactttt
aggctagatccctttcagcgtcaggcaattttgtgcgtcgaaaatgaccagtcagtcctg
gtctccgcgcacacatctgctggcaaaacggtggttgctgagtacgcgattgctcggggt
ttggcgaataggcagcgggtcatttacacaactcccatcaaggcccttagtaaccagaaa
ttccgtgaatttttagtggaattcaaggatgtgggcttaatgactggagatattacgatc
aatccagaatcaacccttctcataatgaccactgaaattcttcgtggatcggaggtaacg
agggagctgggctgggtgatcttcgatgagattcactatatgcgtgaaagagaacgagga
gtggtgtgggaggagtcgatcatcctcctgccggacagtgtgagtcaggtcttcctcagt
gccaccattcccaatgccagacagttcgccgagtgggtcgccttcctgcacaggcgaccg
tgtcatgtcatttatactgactaccgccccacgcctctccaacattacgtattcccttgt
ggtggagatggcatcttcttgcgcgagttcctggaagccaacttcaactcagcgctggac
gtaattcgcggggccgcgggcaacgctcaatcagacacagcgatgcgtggtcggagaggc
ggatctcttagggctgcaacctactgctataagctcgtcaaacttgtgatggatcaagaa
ctcgagcctctaatcgttttttccttcagtaagaaggactgtgaattctacgccagtcag
ctctcacaagtggattttaacggagataaagataaagctgccgttgatctaatcgttaga
aatgctcttgaatctctctcaccggaggatcagaagcttccacagattctctctactgta
ccgatccttcgacgaggcattggttttcaccacggcggtctgctaccaattctcaaggaa
attgtcgaaattctctttgccgagggttatcttaaggtcctctttgccactgagactttt
gctatgggtctgaatatgccagcacgaacggttctcttcacggcaacgcgcaagttcgat
ggacagaactttcgtcacatctcccctggtgagtacatccaaatgtcggggcgagcaggg
cgaagaggtaaggacgacagaggtacagtgattctcatgctcgatgacactgttactccc
gatgcggccaagcagcttcttctgggaatgccggaccctctaaattcggccttcactctt
tcttacaacatggtgctcaatcttctcctcgtcgaggacatcaatccccagattatgctt
gagaaaagtttcttccaattccaaaactatgcatctattcctgctctagaacggagtgag
tccgtcgagatcgccagtttggacgccgaattcaaaggtatagaattgccggaagacgta
aacatagagcagctctccaatatactccagctgcgtcaaggggttgagactctggagcgt
gagaagtggcagctgtcaatgaagtttaaatacgtctccccgttcctgcagcctggtcgt
ctacttcgagttgaaagtgcagatggtgttgactacggttgggctattgtattgaatctt
cgccgtttcaaacagcgcaatccgtacggtggtggtgtaatatcggatacggtgatggtt
gacgtacttgtccgtgtcgccacagccagtcctgataccgttaccatcgagccttcacct
ccctctctcacctccttcaagcctctcgatgatttcgatctgcttgtggcggcagaagga
aaaatagaggaagttacggagccactgtcgaagaagcgcaaacgaacttcggaaggtacc
ccaaaggcatcgaagcagaaccaggcgcccaccagccccgtatctacggccatcattgct
agtgtgccactcgattgcctgcgcgaaatgtcgtcggtctgccttaatttctccttcatt
gacggtgcagacactaaggaccctaccgccttggttgaaaaagtcgccaaactcccctct
tcgatgcgacttcacttctgggagggtatccatcgagccagatctaagttaggtggagaa
cttcccctaattgaccctgttaaagacatgggcgtcaaagacagtcgtctggccacctgt
ctaaagaacattcacttgctgcaagcccgagttacgctcaacccgctctccggcaggaag
gacctcgactacctcttacacacgcataaaaaacgcatcgcgaagtacttggagttgcgt
gttgtccatgaggagctcgatcagaaggagtcattgctgcagttggacgaattgcattca
cgaaagcgtgtgctacgccgcctgggttttagcaccgaagatgatgtcattcatttgaaa
ggccgcatcgcctgtgaaatttcctctggagatgaactgatgttaactgagctactccta
gatggcttctttagtgatctctctgcggatcagattgcaggtgcactttcttgttttgtc
acagagaagagcagcactaaggagccgcctaagcttcgtcctgacatggaagccgccctt
aacaccattcgttcgaaagctcgatacttggcgactgtggcagaggagagtcgtttgcac
tcgggccccatggcttcgacaccaggaggtccgatcaagggcgatggaaacatttttgct
gagggtggtcggagcgccgttgatgactatgtagccaagttctcgggcgaaatgatggag
attgtacgctcttgggcacagggtgtctcctttgctgagctctgtcagatgacgccactc
ttcgaaggcaatgtcattcgctgcttgcgacgactagaggaactcttaaggcaaatgcat
gaggctgccaaggtagcagggaatgcagatctggaaaataagttcgtcaaggccatgaca
ttgatcaagagagatattgtcttcgccgctagcctctacctttga
DBGET
integrated database retrieval system
