Echinococcus granulosus (hydatid tapeworm): EGR_03185
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Entry
EGR_03185 CDS
T05553
Name
(RefSeq) Collagen alpha-1(XXVII) chain
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
egl
Echinococcus granulosus (hydatid tapeworm)
Pathway
egl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
egl00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
EGR_03185
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
egl00536
]
EGR_03185
Glycosaminoglycan binding proteins [BR:
egl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
EGR_03185
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
DUF1202
Motif
Other DBs
NCBI-GeneID:
36338900
NCBI-ProteinID:
XP_024353108
UniProt:
W6UU63
LinkDB
All DBs
Position
Unknown
AA seq
1332 aa
AA seq
DB search
MGSTRRLCLLALACLLLVTVSFGEPLRRLKKTNNSVKGPAPFGDTQYRPGQAGPQGERGP
QGPPGLDGEMGPPGPPGPPGPAGSNGPEGPPGPPGPPGVDGRMGRDGEPGLPGPQGDMGP
PGPMGPTGPPGAKGPTGPQGSKGERGDQGRDGPEGMRGETGHQGPGGRAGPRGTRGPAGP
VGAQGPRGPDGADGMGLPGRDGAQGPKGEPGLRGLAGSPGPQGPRGVSGPAGASGEAGPK
GPVGSPGPVGSPGPTGNQGHPGPIGPRGPTGPPGPMGPTGPRGPRGRAGQKGAMGPPGAP
GAPGAPGSDGRPGQPGASGRQGPRGRTGPRGEAGPAGPDGSDGKTGPIGHPGPDGKEGAP
GPQGPQGPRGFPGKSGEDGVPGRPGVSGPSGEQGARGPPGPQGEHGTPGPNGPVGPKGDR
GDKGPTGPAGIQGETGPSGPRGRPGRQGPKGGQGPMGPDGPAGPRGPRGPSGEPGDDGKE
GEPGRDAEDGPAGPRGRPGPAGDRGEAGPPGPAGTPGEPGVKGDAGPMGPMGVMGAAGLP
GVPGEDGAQGARGYKGDRGRQGARGLPGKHGEPGPRGPSGKEGPPGFLRIIGRSIGVSGP
PGETGAVGPTGPKGRAGMQGVQGQPGPPGAPGAAGSRGVPGAKGPNGNPGRDGPSGTPGL
PGPAGLSGASGPAGQPGPRGKPGLPGSPGFDGIPGLRGMTGSSGKPGPTGRVGEPGDRGP
PGPIGPAGRDGAPGREGAQGDQGATGEPGPMGDKGPQGGVGRDGPMGSQGMRGANGSPGA
QGPPGPEGLPGPQGPQGPTGDQGPQGPPGPQGRKGPVGEEGPEGSIGPDGPIGPEGPVGE
VGDAGLPGFRGPRGVRGVTGSIGLEGPVGLPGRQGAPGARGRAGKPGAPGAQGEVGPPGE
PGADGKDGSPGPEGLPGPQGHPGWMGPPGLPGEQGDDGPRGDTGEAGPDGNPGPAGEAGL
IGPRGKTGPKGPRGDPGLPGPQGPTGRDGPRGPPGPVGPPGPPGPPGPPAVKMPMMTSPT
KGNIMYSDAAAIAQVFGVESISVPLGTRDVPALTCRDLAKSHPNLQDGLYWVDPNGGGPE
DAIHVYCNFKTKETCIDSNQAVYSAGAEKQSSTDDFTWLGEVADYGNLLYKVEGTQLVML
KARSLGAHQTLTVSCAKGLKLYSDNEIELTSNEVHAKFSVTSNTCQNNSGLPKEVVLDVY
GPPLRLPVRDVAFAVAEAKMNVRVGQVSKWAMRCPQLVDSQDLNLTRLRFHSNGSYFIIC
GVFVDPMEVCHYTGNMDLKVTRLIEGRRDKEGIGNIPLHDYKDVKNWLGDHEVNFNFRAC
QRSRTGLYYERT
NT seq
3999 nt
NT seq
+upstream
nt +downstream
nt
atggggtctacacgaagactctgtttgctggctctcgcctgcttgcttctcgtcaccgtt
tcattcggtgagccattgaggcgtttgaagaaaacgaacaacagtgtgaaaggtccagct
ccattcggcgacacgcagtatcgccctggacaggccggacctcagggggaacgcgggccc
caaggaccaccgggtctagacggagaaatggggccacctgggccaccgggaccgcctggc
cccgcaggatcaaatggtcctgagggcccgcccggcccacccggtccacccggagtcgac
ggacgcatgggccgcgatggagaacccggattgcctggaccgcagggtgatatgggtccg
cccggtcccatgggcccaaccggtccccctggtgcaaaaggccccacgggtcctcagggt
tccaagggcgagcgcggtgatcagggtcgtgacggacctgagggtatgcgtggggagaca
ggtcaccaaggtccgggtggtcgtgcgggtccacgaggaacacgaggaccagcaggacct
gttggagctcaaggaccccgtggtccagacggagccgacggaatggggttgcctggtcgt
gatggggcccaaggtccaaagggtgagcctggactgcgaggtcttgcaggatctccgggt
ccacagggcccacgaggtgtttctggtcctgctggagcttctggagaagccggtccgaag
ggtccagtcggcagccccggacctgttggctctcctggacccactggtaatcaaggccat
cctggacctatcggacctcgaggccccactggcccacctggtccaatgggtcctactgga
ccacgtggtccacgcggacgtgccggacagaagggtgcaatgggtccgccaggtgctcca
ggcgctcccggagctcctggaagtgacggtcgccctggacagccaggtgcttcgggacga
cagggtccccgtggacgtactggtccgcgcggtgaagcaggtcctgcagggcccgacggt
tctgatggtaaaaccggccccatcggccatcctggtccagacggaaaggagggagcgccc
ggacctcagggcccccagggtccacgtggttttcctggtaaatctggtgaagacggtgtc
cctggccgtcccggcgtctctggtccttctggtgaacaaggcgcacggggtcctcctggt
ccacaaggcgagcatggaactcccggtcccaacggtccagtgggtcccaagggagaccga
ggtgacaaagggcccactggtccggcgggtatacaaggtgagactggtccttctggaccc
cgaggaaggcctggtcgtcaaggtcccaagggtggacagggccccatgggtcccgacgga
cctgccggacctcgaggtccacgcggcccgagtggtgagcctggagacgacggtaaagaa
ggcgagcctggcagggacgctgaagatggaccagctggaccccggggtcgtcctggtcct
gccggtgaccgtggtgaggctggtccaccgggtcccgctggcactcccggtgaacctgga
gtcaagggtgatgctggtcccatgggtcctatgggagtcatgggtgctgcaggtcttcct
ggtgtacctggcgaagatggagctcaaggtgcccgcggctacaaaggtgaccgtggacgt
caaggcgcacgtggtcttccaggcaagcacggtgaacctggaccccgcggtccatcaggg
aaggagggtccgcctggcttcctcaggataattgggagaagtatcggtgtgtccggacct
ccaggtgagactggtgctgtgggacctacaggacctaagggtcgtgcagggatgcaaggc
gttcagggacaaccaggtccaccaggagctcctggagcagcaggaagtcgaggtgtaccg
ggtgccaagggtcccaatggcaatcctggtcgggatggtcctagcggaacgcctggactg
cctggtcctgcggggcttagtggggcttctggtcctgctggtcagcctggaccacgtggg
aaaccaggtcttcctggttctcctggtttcgatggcattcctggtctgcgtggtatgacc
ggatcaagcggaaagcccggtcctactggtagggtcggagagcctggagataggggtcct
cccggaccaattggtcctgctggacgtgatggagcccccgggcgtgaaggtgctcagggt
gaccagggagccaccggtgaacccggtcccatgggggacaagggtccccaaggaggtgtt
ggtcgagacggtccaatgggttcacagggcatgcgtggagccaatggcagtccgggcgct
cagggacctcctggcccagagggtcttcctggaccgcagggtccccagggtcccactggt
gaccaaggtccgcaaggtccgcctggtcctcagggtcgcaaaggtccagtcggtgaggag
ggtcctgaaggatccatcggtcccgacggtcctattggacctgagggtccagttggagag
gttggtgatgctggtcttcccggcttccgtggtcctcgtggtgtacggggcgtaaccggt
tccatcggcttggagggtccagttggtctgccgggccgtcagggtgcacctggtgctcgt
ggccgtgctggcaagcccggagctcccggagcccagggagaagttggtccccctggtgaa
cccggtgccgatggaaaggacggaagtcccggacctgaaggtcttccaggccctcagggc
caccctggctggatgggacctccaggcttgcctggcgaacagggagacgacggaccccgt
ggtgacactggtgaggcaggtcctgatggaaatcctggtccagctggtgaggctggtctc
atcggcccgcgaggaaagactggccccaagggaccccgtggagaccccggacttccaggc
cctcaaggtccaactggtcgtgatggtcctcgaggtccacctggacctgttggcccaccc
ggccctccgggtcctcctggtccacctgccgtcaagatgcctatgatgacgtcacccacc
aagggcaacatcatgtattcggacgctgctgccatcgctcaggtcttcggtgttgaatcc
atctcagttccactgggtactcgtgacgtccctgcgctcacgtgcagggatcttgccaag
tctcatcctaatttgcaggatggcctctattgggtggatccaaacgggggtggtccggaa
gacgcaattcatgtctactgcaacttcaagacaaaagagacttgcatcgattccaatcag
gctgtctactcagcgggtgcggaaaagcagagttcgactgatgattttacgtggctgggt
gaagtggcggactacggcaacctcctctataaagttgaaggtacccaactggtcatgctg
aaagcgcgctctttgggcgcacaccaaactctgactgtctcctgcgccaagggcctcaaa
ctctactcagacaacgaaattgaactaacctccaacgaagtccatgccaaattcagtgtc
acctctaacacttgtcagaacaactctggccttcctaaagaagtagtgttggatgtgtac
gggccaccacttcgtctgccagtgcgtgacgtggccttcgccgtggcagaggccaagatg
aatgttcgagtgggtcaggtgtctaagtgggcaatgaggtgtcctcagttagttgactct
caagatctcaacttgactcgattaaggttccacagcaacggcagctattttataatttgc
ggggtctttgttgatcctatggaggtatgccattacacgggtaacatggatttaaaggtg
acacggctgattgaggggcgaagagataaagagggaattggcaatattccgcttcacgac
tacaaggatgtcaaaaattggttaggagaccacgaggtcaacttcaacttcagagcttgc
cagaggtcgagaaccgggctgtattacgaacgcacgtga
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