KEGG   Echinococcus granulosus (hydatid tapeworm): EGR_04044
Entry
EGR_04044         CDS       T05553                                 
Name
(RefSeq) Replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
egl  Echinococcus granulosus (hydatid tapeworm)
Pathway
egl03030  DNA replication
egl03410  Base excision repair
egl03420  Nucleotide excision repair
egl03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:egl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    EGR_04044
   03410 Base excision repair
    EGR_04044
   03420 Nucleotide excision repair
    EGR_04044
   03430 Mismatch repair
    EGR_04044
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:egl03032]
    EGR_04044
   03036 Chromosome and associated proteins [BR:egl03036]
    EGR_04044
   03400 DNA repair and recombination proteins [BR:egl03400]
    EGR_04044
DNA replication proteins [BR:egl03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    EGR_04044
  DNA Replication Termination Factors
   ELG1-RFC complex
    EGR_04044
Chromosome and associated proteins [BR:egl03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    EGR_04044
DNA repair and recombination proteins [BR:egl03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     EGR_04044
  Check point factors
   HRAD17(Rad24)-RFC complex
    EGR_04044
SSDB
Motif
Pfam: AAA DNA_pol3_delta2 AAA_22 RCF1-5-like_lid AAA_16 Rad17 Mg_chelatase AAA_14 AAA_11 AAA_24 Rep_fac_C RuvB_N DUF815 AAA_assoc_2 AAA_28 AAA_2 ABC_tran AAA_5 bpMoxR SLFN-g3_helicase IstB_IS21 AAA_25 AAA_7 RNA_helicase ResIII AAA_23 AAA_30 nSTAND3 AAA_19 TsaE ATPase_2
Other DBs
NCBI-GeneID: 36339759
NCBI-ProteinID: XP_024352207
UniProt: W6UIQ3
LinkDB
Position
Unknown
AA seq 391 aa
MDRFLTGPAASKKDNSGGKVFIPWVEKYRPKTVNDVAQQAEVVSVLRKCLEGADLPNLLF
YGPPGTGKTSLILALARQLFGPLYSDRVLELNASDERGIGVIREKVKNFSKLAVSSNAEG
ASGSVSPPPYKLVVLDEADSMTAPAQAALRRLMETDVKNTRFCLTCNYVTRIIGPITSRC
AKFRFKPLDSEVARSRLRYIADAENIAISDATLDHLLVLCEGDLRQGITFLQSALRFATP
CGQKGSTKSVPVTRDDLDRVATVVPEQFENALISAAKKRDFDALQSTILDFTGESLSAPQ
FLTQLQSRIMDSTEFSDRSKQKILQDMATVVFYVCPWTHTGPTAARGAIPLCELVLTVKG
AEDKLLPGKWLERVNQSKERLASKVVQELTS
NT seq 1176 nt   +upstreamnt  +downstreamnt
atggacaggtttcttactggtcctgcggcatcaaaaaaggataactcaggcggcaaagtg
tttattccctgggtcgaaaaatatcgacccaaaactgtgaatgatgtcgcccagcaagct
gaagttgtttctgtcctccgaaaatgtttggagggcgccgatttacccaatcttttattt
tacgggcctccgggtactggcaagacttctttgatcctcgctcttgcgcgtcagcttttt
ggacccttgtactcagacagagtccttgaattaaatgctagtgatgagcgtggtatcggt
gtgatccgtgaaaaggttaaaaacttctccaaactggccgttagcagcaatgctgagggt
gctagcggttcggtttctccaccaccttacaaattggttgttctcgatgaagccgactca
atgactgctcctgctcaggctgctctccgacgtctcatggaaactgatgtgaagaacaca
cgattctgtttgacctgcaattacgtgactcgaatcattggtccaatcaccagtcgctgc
gctaaattcaggttcaaaccccttgatagcgaggtcgcaaggtccagacttcgctatatc
gctgacgctgagaacatcgccatctctgatgccactttggaccaccttttggtcttgtgt
gaaggtgatctgcgtcaaggcatcacttttcttcagtcggctctccgttttgcaacccct
tgtggtcaaaagggatccacaaaatctgttcctgtcactcgtgatgatctggatcgggta
gctactgtggttcccgagcagtttgaaaacgctcttatttctgctgcaaaaaaacgtgat
tttgatgctctgcagtcgacaatccttgactttacaggagaaagtctctcagcacctcaa
tttttgactcaactgcaatcgcgaataatggattcgacggaattttcggatcgttcaaag
cagaagatattgcaggatatggcgactgtcgttttctacgtctgtccgtggactcacact
ggacctacagctgcgagaggtgccattcctctctgtgagttggtcctgactgtcaaaggc
gcagaagataaacttcttcctggaaaatggctagaacgcgtcaatcagtcgaaggaacgt
cttgcctccaaagtggtgcaagaactcacgtcctaa

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