Echinococcus granulosus (hydatid tapeworm): EGR_07245
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Entry
EGR_07245 CDS
T05553
Name
(RefSeq) Exosome complex exonuclease RRP4
KO
K03679
exosome complex component RRP4
Organism
egl
Echinococcus granulosus (hydatid tapeworm)
Pathway
egl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
egl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EGR_07245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egl03019
]
EGR_07245
Messenger RNA biogenesis [BR:
egl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
EGR_07245
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
EGR_07245
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRP4_S1
KH_6
ECR1_N
RRP40_S1
Motif
Other DBs
NCBI-GeneID:
36342960
NCBI-ProteinID:
XP_024349079
LinkDB
All DBs
Position
Unknown
AA seq
370 aa
AA seq
DB search
MSIRITPTVLQEAYTRGGGGEGGGPVGVKEDFRGIVIPGEVIFTSGANLITGHGTYRVDD
SGGVAEAAAAEQSTLMDDSVAASALPMHASMAGRLKSVNKLVYVEPPNTRYSGNVGDTVV
GRIVEVEQKRWKVDVNSYHLANLSLANVKLPTGELRRKSEDDERAMRSFMREGDLIVAEV
REVYRDGSLQLHMPGMRTGRLGEGCVLRLPPSLIRRQKIHRHQLVVPCGGGGGGSGEEAA
RSICVGLILGCNGLVWIGPERGMNLGARLGATISARKPHSTTGAITAEVEERVAVGRVRN
VVLALVACGHLVWETAVLAGCEASFFEEAEEAEGPVGGNGADGAAPITRLLLPEHQRHLV
DLVMAKLAAA
NT seq
1113 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatcagaatcactcccacagtgttgcaagaggcctacactcgaggaggcggaggt
gaaggaggagggccggtaggagtgaaggaagactttcgtgggatagttatccctggtgaa
gttatcttcacctcgggcgccaacctcatcaccggtcacggtacataccgagtggatgac
tcgggcggagttgccgaggcagctgcggcggagcagtcgacgttgatggacgactctgtt
gctgcttccgctctacccatgcacgcttcgatggccggtcgtctaaagtcggtaaacaaa
ttggtctacgtggaaccgcccaacactcgctactctggcaacgttggggacactgttgtg
ggacggattgttgaagtggaacaaaaacgatggaaggtggatgttaactcctaccacctg
gccaatctctcccttgccaacgtcaagctgccgacgggggagctacgccgaaaatcggaa
gatgacgaacgcgctatgcgctccttcatgcgggaaggcgacttgatagtggcagaagtg
cgagaggtctatcgagacggcagtctacagttgcacatgccaggcatgcgtacgggtcgg
ttgggtgaggggtgtgtgctgcgtctaccccctagtctcatccgccgacagaagattcac
cgccaccaacttgtagtgccctgtggtggaggtggagggggttcaggtgaggaagcggca
cgtagtatatgtgtcggtctcatccttggctgcaatggccttgtgtggatcggacctgaa
cgaggtatgaacctcggggcgcgcctcggtgctacaatttcggcccggaagccgcactcc
accactggtgccatcacagcggaggtggaggagcgcgtggcagtggggcgagtgcgtaac
gtggtgcttgccttggtggcgtgcgggcaccttgtgtgggagacggcggtattggcagga
tgtgaggctagcttctttgaggaggcggaagaggcggaggggcctgttggcggtaatgga
gccgacggcgctgcacccatcacccgtctccttctgccagagcatcagaggcatcttgtt
gatcttgtcatggcaaagctggcggctgcttga
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