KEGG   Echinococcus granulosus (hydatid tapeworm): EGR_07431
Entry
EGR_07431         CDS       T05553                                 
Name
(RefSeq) Symplekin
  KO
K06100  symplekin
Organism
egl  Echinococcus granulosus (hydatid tapeworm)
Pathway
egl03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:egl00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    EGR_07431
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:egl03021]
    EGR_07431
   03019 Messenger RNA biogenesis [BR:egl03019]
    EGR_07431
Transcription machinery [BR:egl03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     EGR_07431
Messenger RNA biogenesis [BR:egl03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     EGR_07431
    U7-dependent histone pre-mRNA processing factors
     EGR_07431
SSDB
Motif
Pfam: Symplekin_C SYMPK_PTA1_N
Other DBs
NCBI-GeneID: 36343146
NCBI-ProteinID: XP_024348886
UniProt: W6U9K7
LinkDB
Position
Unknown
AA seq 1532 aa
MACSQFDRVAGILRRATYTNDTREKIECLHQVKELIINYDRSLLDSFFEEVVAFQHYQNN
ELRRFVIKFIEEACIADGSLIVKSIACLSHLFNLSLHSDPPFSGIIRTIIGTMKMIYSRS
LTRAVKCGVIESGAMTGGGIKSGSLADTSLETFRAVVVFKDEIIRLLLPSSVPVMPGSAV
TPPPPSILTRLCANLNDAARVDIIKFIEAVIIQQSRRTPNSETLSHPTELTLDQIPDLPN
SLLKSIVNASTASSSVNPLPGICLVRPRRLSDEAERLLSGLTMLPLKQGDDNALRSIVTS
IVFDALIDTVVSIARQRPQFYNEAVQSFETIHVNLPPHFTQAQVNSARRKLKAALLCLLQ
HSATNTGYQSRVIILLTDLGATQQEVALCLPQLFPTASSANKRGHIDSLSRGQSNLGNEE
EDDEEEERKTVRVAKRPRIDSGSSTIAASTFVVSSNKEAIPSIEDITTCLVPKLTTANVA
DLVLLSMVTLPSRMPAAFDATYTPIAAAGTATQVRHLARLLAAQLVVWVTDAAGEEGVNR
ENCALLSQLMADNVTEKGEDSGGGGVGSCGGGDDDESVSRKAVPRSAKRNSERIDEDDEA
AFMKEHAARMHTTIKPMNISVVRGAVSAGESTPSVPMTFNPSLPQASLPSSTGAVQTRPF
SLDAVVAPLPAQLRQSMARDAFSRILAFECASHSRTAAEESTRAVSVHSDLTPREAARVK
LLCRLPPIRRLSSSYLYPLLITHAMENPKEGFELLANLLMHEYTAFRGFRLSGAFENALT
STKIKAEDGEGGYSDEEDADDEEDGADEARRLLLESQRQLMALRAREGVEVVGETQEIQV
GCDLADEEEKGDCDLRTMAATTTATSVSIASAGDGMLQDFGSLAIYDALFTEILTRFVDS
GVKSPYFGRLLLEAPLLTANAIRVLKRYCTLPDHATFGFQVLRSLIELRPTQRREELLDL
LLGFCAFEESTVRRAALKATSQLADSHPRWEKLVEDRAIERLKHILQPQPTAEMFLGLLT
KPPLLTSQWTDETCQLCAHLFLGLMPRNPGKLLLTLAEIYVAASDSVRRCLLRLMDTSAS
LHTRICEIGLHSPHLLHLLDNCPSGAETLVTRMIHILTDPRTAFAHASVAPPPSPPPSAG
PVTKASTQPASPHAYAPASLNIPIMPPPALVERVRRLYRERIRDVRCLIPVIVGLTKQEV
IAVLPQLVQLNEKVVKEVISRLLHASVATQPAPDPRAAEIASKVVSKEAAVVGPVTPEEL
LVAIHLLEFVKDPNAIPEQPSKKPYVEIRVILQACLHCFAERALYTQERLSAAIGQLLDR
PVVPTLFLRTVMQALALYPRLTGYVINVLFRLIQKQVWKSEVLWDGFIRCCVKTQPQSYQ
VLLQLPPQQLQSVFTREPNLRTQVRRYVDNFSSAQRTHISRGVFEMLEREVSPLQSSSSE
AAPVAAAATMTTREGQQEVGAETKADDVASSGSATPLRDEVLQAKTPSPVAAEGAVEGKE
LAQSAKQGEAEERQFEDELVAKPSCTTETGEH
NT seq 4599 nt   +upstreamnt  +downstreamnt
atggcctgcagtcaattcgatagagttgcgggaattcttcggagggcgacatacaccaat
gatacgagggaaaaaattgaatgccttcatcaagtaaaggaattgattataaactatgat
cggtctttgcttgatagcttctttgaggaagtcgttgcctttcagcactatcaaaacaat
gagttgaggcgatttgtcataaagtttattgaggaggcatgtatagcagacgggagcctc
attgtaaaatccattgcctgtttgtcccatctattcaacttatcgcttcattctgatcca
ccgttttcgggcatcatacgaactattatcgggacaatgaaaatgatctacagtcggtct
ctcactcgagctgtcaagtgcggagtcatcgaatcgggtgccatgaccggcggtggtatt
aagtctggttccttagctgacacttctctcgaaacttttcgtgctgttgttgtttttaag
gacgaaataatccgattgcttcttccctcctctgtgccggttatgccgggcagtgctgtc
actccacccccacccagtattttgacacgtctctgcgccaacctcaatgatgctgctcgc
gtggatatcatcaaattcattgaggccgttatcatacaacagtccagacggactcctaat
tctgagaccctttcccaccccacagaactcactctagaccaaattcctgacttgcctaac
agcttgctgaagagcatcgtaaatgcgagtacggcgtcatcctcggtcaatccgctaccg
gggatttgtctcgttcgtcctcgacgcttatcagacgaggctgaacgacttctttccggc
ctgacaatgctgcctctgaagcagggagacgacaatgctcttcgatccattgtcaccagc
atagttttcgatgctcttattgatactgttgtcagtattgctcgtcaacgtccgcaattt
tataatgaggctgtgcagtcctttgaaaccatccatgtaaatctcccaccacacttcact
caggcacaagtcaattcggcgcgaaggaagttgaaggcggcacttctctgtcttcttcag
cattctgccactaacacagggtaccagagtcgagtgataattcttctcacggatctgggt
gccactcaacaggaggttgccctctgccttcctcaactttttccaaccgcatcatccgca
aacaaacgtggtcatattgattcactgtccagaggccaatctaaccttgggaacgaggag
gaagatgatgaggaagaagagaggaaaacagtaagggttgctaaacggcctcgcatcgac
tctggctcctccactatcgctgcctccaccttcgtcgtctcgtccaacaaggaagcgatt
cccagcattgaggatatcaccacttgcctcgtgccaaagctgaccaccgctaatgtggcg
gatttggttcttctcagcatggtcactcttccatcccgtatgccggcggcgttcgatgcc
acctacacacctatcgctgcggcaggaaccgctactcaagtgcgtcacttggcccgtctg
ctggctgctcagcttgtcgtttgggtgaccgatgcagctggtgaggagggagtgaatcgc
gagaattgcgcgttgcttagtcagttgatggcggataacgtcaccgaaaagggcgaagac
agtggtggcggtggggttggtagttgcggtggtggtgatgacgacgaatctgtgagcaga
aaggctgtccctaggtcagccaaacggaatagcgagaggattgacgaggatgacgaagct
gctttcatgaaggagcatgcagctagaatgcacaccaccatcaagccgatgaacatcagc
gtcgtgcggggcgcagtctcagcgggagagagcactccatcggtacctatgaccttcaat
ccctcgctaccacaggcctccctcccctcctccactggtgctgtccaaactcggccgttc
tccctcgacgccgtggtggctcctctacccgcccagttgcgtcagagtatggcacgagat
gccttctcacgtatcctcgcctttgaatgtgcctcgcatagtcgtacagccgcggaggag
tccaccagggcagtatcagtgcactccgacttgactccccgcgaggcggctcgtgtgaaa
ctcctctgtcgtctgccccccattagacgcctctcctcgagttacctctaccctcttctt
atcactcacgcaatggagaacccaaaggagggttttgagctccttgcaaatcttctgatg
catgagtacaccgcatttcgcggcttccggctttctggtgcatttgaaaatgctctgacg
agcaccaaaatcaaggcagaagacggggaaggcggatacagcgacgaagaagacgctgac
gacgaagaggatggtgcagacgaggcgcgacgactcttattggaatcacagcgacagttg
atggctctgcgagcccgcgaaggtgtggaggtcgtaggcgagacgcaggagattcaggta
gggtgcgatttagctgacgaagaggaaaaaggagactgtgacttaaggacgatggcggcg
acgaccaccgctacctcggtctccatcgcctcggctggagatggcatgcttcaggacttc
ggctccctcgctatctacgatgccctcttcacggagattctcactcgcttcgtggattcc
ggcgtcaagtctccgtattttggtcgactattgcttgaggccccgcttctgactgcgaac
gcgatcagagtattgaagcgctactgcacacttcccgaccacgccacattcggatttcag
gtgcttcgctcactgatcgagctgaggccgacgcagagacgtgaggagttgttggacctc
ctcttggggttctgtgccttcgaagaatccaccgttcgcagagccgccctcaaagctacc
tctcagttggctgattcgcacccgcggtgggagaaactcgttgaggatcgtgcgatcgag
cgtctgaagcacatcctccagccccagcctacagccgagatgttcttgggtcttctgacc
aaaccaccactgctcacctctcagtggactgacgagacgtgtcaactctgtgcacaccta
ttcctcggtctcatgcctcgcaatccgggcaaactgcttttgactctggcggagatctac
gtcgctgctagcgacagcgtgcgccgctgccttcttcgtctcatggatacctcggcaagt
ctccacacgcgcatctgcgaaatcggtctgcactcgccacaccttcttcatctcctcgac
aactgtccgtctggggcagagaccctcgtcacacgcatgattcacattctcactgatccg
agaacggcctttgctcatgcatcagtagcaccgccaccgtcgccacccccctccgcaggc
cccgtcacgaaggcatcgacgcagccagcaagcccccatgcttatgcacctgcttctctt
aatatccccattatgcctccaccggctttggtggaacgcgtgcgtcggctgtatcgcgag
cgcattcgcgatgtgcgttgccttatcccggtgattgtgggccttaccaaacaggaggtg
attgcggtgctgccgcagttggtacagctgaatgaaaaggtcgtgaaggaggtcattagc
cgccttctccatgccagtgtggccactcaaccggctcccgatccgcgtgctgcggaaatt
gcgtcgaaagtggtctcgaaggaggctgcagttgtgggaccagtgacaccagaggaactt
ctcgtggcgatccatcttctcgaattcgtcaaagaccccaatgccatcccggagcaaccc
tctaagaagccgtacgtggagatccgagtgatacttcaggcctgtttgcactgcttcgcc
gagcgtgcgctctacacgcaggagcgtttgtcggcggctatcggacagctgctcgaccgt
ccggtggtgccgacactcttcttacgcaccgtcatgcaagcattggctctttaccctcgc
cttactggctacgtcatcaacgtcctctttcgtcttatccagaagcaggtgtggaagagc
gaggttctgtgggatggtttcattcgttgctgtgtgaagacgcagccgcagagctaccag
gtgctacttcagttgccaccacagcagctgcaatccgtgttcactcgagagccgaacttg
cgcactcaggtccgtcgttacgtggacaatttctcctctgctcagcgcactcacatctct
cgtggcgtttttgaaatgttggaacgcgaggtgtctccgctgcaatcgtcctcttctgag
gcagcgccagtagcagcagctgcaacgatgaccacaagggagggtcagcaggaggtggga
gcagagacgaaagcggacgatgtggcttcctccggttcggccactccgcttcgtgacgag
gtcctccaggcgaagactcccagtccagttgcagccgaaggagcagtagaggggaaggag
ttggcacagagtgcgaagcaaggggaggcagaagaaaggcagtttgaggatgagctggtg
gcaaagccttcctgtaccactgagactggagagcactag

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