Echinococcus granulosus (hydatid tapeworm): EGR_08106
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Entry
EGR_08106 CDS
T05553
Name
(RefSeq) Superkiller viralicidic activity 2-like 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
egl
Echinococcus granulosus (hydatid tapeworm)
Pathway
egl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
egl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EGR_08106
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egl03019
]
EGR_08106
03041 Spliceosome [BR:
egl03041
]
EGR_08106
03009 Ribosome biogenesis [BR:
egl03009
]
EGR_08106
03016 Transfer RNA biogenesis [BR:
egl03016
]
EGR_08106
Enzymes [BR:
egl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EGR_08106
Messenger RNA biogenesis [BR:
egl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
EGR_08106
Spliceosome [BR:
egl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
EGR_08106
Complex C
U4/U6.U5 tri-SnRNP related factors
EGR_08106
Ribosome biogenesis [BR:
egl03009
]
Eukaryotic type
Pre-60S particles
Helicases
EGR_08106
Transfer RNA biogenesis [BR:
egl03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
EGR_08106
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
Aegyptin_C
ATPase_2
Motif
Other DBs
NCBI-GeneID:
36343821
NCBI-ProteinID:
XP_024348226
UniProt:
W6U775
LinkDB
All DBs
Position
Unknown
AA seq
1029 aa
AA seq
DB search
MSNVFGVDIDELASVFEDKGTGEIPIALVKSKDAGQVDEEFEKKKRKVEENLREHINIST
KEEHVEPSKDPKLSSVLESTLSKAPRIKIYKIPAPSTCTHEVAYPPGIPFKRLEVISEPK
ILTFPFTLDPFQSQALLCIDNNESVMVSAHTSAGKTVIAEYAIAKALRDKQRVIYTTPIK
ALSNQKYREFSEEFPEVGLLTGDATININASVLIMTTEILQSMLYRGSSIMREVGWVVFD
EIHYMRDPERGVVWEESLVLLPDCVRFVFLSATTPNARQFAEWIAFLHAQPCHVVTTDTR
PVPLRHYIYPLGGDGLYLVLNEGNYIEENFRKAMASFPKQKELGGPGTSRAKTGPMSKKT
EDNVSKMVRLVKKHNLEPVIVFCFSRKECEIYALKMSECDFITPADKNVVEEVFKNAIGG
LSPEDRCLPQVESVLPLLKKGIGIHHGGLLPILKETVEILFGEGLMKCLFATETFAMGLN
MPARTVVFTSVRKYDGVNYRWITAGEYIQMSGRAGRRGKDASGTVILMVDETLTEQAGHA
ILQGKPAPLNSAFHITYNMLLNLLRVEEINPEYLMERSFCQFQNYSRLPELSEELNRLQT
ELSTTVLEEEKAVESYRKIQLCLQEIVEQQWRYIRRPEHIVSFLQPGRLVKIESEGDDYG
WGVVINLKKRQRNDRVSALETFYVLDCLLATRPTADTAGADEAPSTSAPKSAEILPVRLD
CVCGISAVRLMVPQDLRSPEARSLLYASIEKVKTKLGVADLPHLDPVRDMHITDAKFKEI
TEKARLFEQRLEAHPLHKSPRLPELLGAYERREAQRRRIDEVTRSLTQKVSLIQMDDLVG
RKRVLRRLGFCNEHDVIELKGRVACEITSADELVLTELLFEGIFNRLSAEQVASLLSCFV
FDERASEMPKLSAEMADALRTLQDIARRIARISRECHLPVDPDSYVDSFKPYLMDLVLSW
AHGATFASVCAGTDLFEGTIIRCLRLLEELLRQMTNAARTIGNAVLEAKFSEAIEKIKRD
IVFAASLYL
NT seq
3090 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaacgttttcggcgttgatattgatgagctggcatcagtttttgaggacaaagga
acaggagaaattccgattgcgctagtaaaatcaaaagatgctgggcaggtggatgaagaa
ttcgagaagaaaaaacgaaaggtggaggagaatctaagggaacacataaacatttccacc
aaagaagaacatgtagagccatctaaggaccccaaattgtcatcggtgctggagtcaacg
ctgtcaaaggccccacgaatcaagatttacaaaattccagcccctagcacctgcacccac
gaagtagcatatcccccgggtataccgtttaagaggttggaagtgatttctgaacccaag
attctaacgtttccattcactctggatccgtttcaaagccaggccctgctttgcattgac
aacaatgaatccgtaatggtttcagctcatacatctgctggcaagacagttattgccgaa
tatgcgatcgccaaggcactgcgagacaagcagcgtgttatttacacaactcccattaag
gcccttagcaatcagaagtatcgagagttctcggaggaatttccggaggtcggtctccta
actggtgatgctacaatcaacattaatgctagtgttctcatcatgaccaccgaaattttg
cagtccatgctctatcgaggctcttccataatgcgcgaggtggggtgggtggtttttgat
gagattcactacatgcgtgacccggaacgaggtgtggtgtgggaggaatcgctggtgctg
ctgcctgattgcgtgcgctttgtcttcctctccgccacaacacccaacgcgcgccagttt
gctgagtggatcgccttcctccacgctcagccgtgccacgtggtcaccacagatactcga
cctgtgcctctgcgacactacatatacccccttggtggcgatggcctctaccttgttctc
aacgaggggaattatatagaggagaatttccgaaaagccatggcctccttccccaagcag
aaggaacttggcggtccaggtaccagtcgtgccaaaacgggtcctatgagcaaaaagacg
gaggacaacgtgtctaagatggtgcgtttggtgaaaaagcacaatctcgaacctgtcatc
gtcttctgtttcagcaggaaggaatgcgaaatctacgccctcaagatgtccgaatgtgac
ttcatcacgcctgcagataagaacgtagtggaggaggtcttcaagaacgctataggtgga
ctctctccggaggatcgctgtctgccgcaggtggaaagtgtcctgcctcttctcaagaaa
ggcatcggtattcatcacggcggccttttaccaattctcaaagagactgtcgagattctc
ttcggagagggcctaatgaagtgcctctttgctactgagacctttgcgatgggtttgaat
atgcctgcccgtaccgtggttttcacctcagtgcgcaaatatgacggtgtcaactaccgt
tggatcacagctggtgagtatattcaaatgtcaggccgagcaggccgaaggggcaaggat
gcaagcggcacggttatattgatggtggatgagaccctcacggagcaggcgggtcacgcc
atcctgcagggtaaacccgcacccctcaactccgccttccacatcacctacaatatgttg
ctgaatcttctgagagtggaggaaatcaatcccgaatatctgatggagcgcagcttctgc
cagtttcaaaactactcccgtcttcccgaactctctgaagagctgaatcggttgcagacg
gagctcagtaccacagtgttggaagaagaaaaggcagtggagtcctatcggaagattcaa
ctgtgccttcaggaaatcgttgaacaacaatggcggtatattcgacgtccggaacatatt
gtctcctttttgcagcctggtcgccttgttaagatcgagtcggagggtgatgattatggc
tggggggtggtgataaatctgaagaagcgtcagcgcaatgaccgcgtctccgcgctggag
actttctatgtcctcgactgtctcctggccactcgccctactgccgacactgctggcgca
gatgaagccccatccacctcagcaccgaaatcggctgaaatcctgcccgtccgactggat
tgcgtatgcggcatcagcgcggtgcgactaatggtgccccaggatctgcgctcaccagaa
gcacgtagtctcctctacgcctccattgaaaaggtcaagacgaaacttggcgtcgctgat
ttgcctcatctcgatcccgtgagggatatgcatatcacggatgctaagttcaaggagatc
actgagaaggcgcgcctttttgagcagcgtcttgaagcccatccccttcataaatctccc
cgcttgcccgaacttctgggtgcctacgagcgccgcgaggcgcagcggcgtcgcattgat
gaggtgactcgcagtctcacacagaaggtctctctcatccaaatggatgatttggtggga
cgcaaacgcgtccttcggcgactgggtttttgcaacgagcacgacgtcattgagctgaag
ggccgggtggcttgcgaaattacatcagcggacgagctggtgctcacggagcttctcttt
gagggcatcttcaatcgtctctcggctgagcaagtcgcttcccttctctcctgcttcgtc
tttgatgagcgcgcctccgaaatgcccaaactctcagccgagatggctgatgcccttcgc
actttgcaggatattgcacgacggattgcgcggattagcagggagtgccatctgccagtg
gacccagactcctacgtggactccttcaaaccgtatctgatggacttggtgttgtcatgg
gcacatggcgctacttttgccagtgtctgtgcgggcaccgacctcttcgaaggaaccatc
attcgttgcctgcgcctgcttgaggaactcctccgccaaatgaccaatgctgctcggacc
atcggcaatgctgtcctcgaagccaaattcagtgaagccattgaaaagattaaacgcgat
attgttttcgccgctagtctctacctctag
DBGET
integrated database retrieval system
