Elizabethkingia bruuniana: AYC65_18920
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Entry
AYC65_18920 CDS
T05037
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
egm
Elizabethkingia bruuniana
Pathway
egm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
egm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AYC65_18920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
egm03400
]
AYC65_18920
Enzymes [BR:
egm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AYC65_18920
DNA repair and recombination proteins [BR:
egm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AYC65_18920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
Choline_kin_N
Motif
Other DBs
NCBI-ProteinID:
AQX86952
LinkDB
All DBs
Position
4052458..4055814
Genome browser
AA seq
1118 aa
AA seq
DB search
MQLTSIKNTLLPDLLKKQWGKEIFDTLREKQKISIKGAAGSSMSLLAAEYFVSFHQPMLI
ILDDKEDALYTTAELEELCGKENVLYFPATFLEPYQIEKTQNANRVLRTEVINQLNSSKV
PKVIIAYAAALSEKVIKKEEFGKFSHTIKVGEQLDFDFIDELLNHYKFNRTDFVSEPGEF
SVRGGIIDVFSYAYEFPFRISFFGNEVDSIRTFDIESQLTQGKVEEFQLVSAIQDISGDT
SKTSLLGILPKETVMFTRNAFLGVKHIREFFEKAQEVYKTLHQDIKYSEPKAIFVSEDEF
LNEINHFVWADFTSEVLKSSRAEIQLKLTQQPVFNKNFEWLIQDLEDKLEKGYDAWISFS
SEKQKDRLESIFEELEKNIPFKSCASELHEGFVDNENKISVYTDHQIFDRYQRYKAKNAF
AKSEQLTLKDLMSLKVGDYITHIDHGIGKFMGLVKVNNNGKVQECFKLSYKNGDLLYVSI
HALHKISKYNGPDGKDIVLSKLGSSAWKSLKQKTKARVKQIAFDLIKLYAQRKSAKGFAY
SPDGYMQNELEASFIYEDTPDQEKATMDVKADMQADTVMDRLICGDVGFGKTEVAIRAAF
KAAVDGKQVALLVPTTILAFQHYRSFKERLKDFPVEVSYLNRFRTAKQKKETLEGLASGK
IDIVIGTHQLVGASVKFKDLGLLIIDEEHKFGVAIKDKLKTMKTNIDTLTLTATPIPRTL
QFSLMAARDLSVIKTPPPNRQPVDTKLVGFNEETLRDAISYELQRDGQVYFINNRIENLK
EIAGLIQRLVPDARVITGHGQMDGKQLEANMMDFMEGKYDVLVSTTIVESGLDVPNANTI
FINDAQRFGMADLHQMRGRVGRSNRKAFCYLITPPMDLVSSDARKRLEAIEQFSDLGSGF
HIAMKDLEIRGAGDLLGGDQSGFINEMGFDTYQKIMQEALEELKDEDMEGLFQNEEERKK
LFNSVKDVNIDTDLELMLPDDYVNSTEERLLLYQKLADVRNAAELSRFEYELNDRFGALP
KEAINLLKSIELKWLAADIGFDKIVMKNGIFLGYFPGNPQDKFYQSDRFKKIIQYLGSNP
QHAQLKEKHSPEGNQLMMRKDKISNVDEVNALLNSILA
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
gtgcaattaacttctataaaaaatacgctgttacccgatttattaaagaaacaatggggt
aaagaaatattcgatacactgcgcgaaaaacaaaagattagtataaaaggagctgcgggt
tcctctatgagtttgctggctgcggaatactttgtgtcattccatcagcctatgctgata
atcttggatgataaagaggatgccttatatactaccgcagagctggaagaactttgtgga
aaagagaatgtattatattttccggcaacttttctggagccttatcagatagaaaaaacg
cagaatgcaaacagagtattgcggacagaggttattaatcaattgaattcgtctaaagta
ccaaaagtaattatagcatatgcggcagcactttcagaaaaggtaatcaagaaggaagag
tttggaaagttctcccataccataaaagtaggagaacaactggattttgattttatagat
gaattgctgaaccattataagttcaacagaacagattttgtatcagagcctggtgaattc
tctgttcgtggtggtattatagatgtgttttcttatgcatacgagtttcccttccggatc
agttttttcgggaatgaagtagacagtattcgtactttcgacatagaaagtcagctaaca
cagggaaaagtggaagaattccagctggtgtccgctattcaggatatctcaggagatact
tcgaaaacttctttgctaggaattcttcctaaggaaactgtcatgtttacccgaaatgca
tttttgggagtaaagcatattcgtgagttttttgaaaaggcgcaggaagtatataaaacc
ctgcatcaggatattaaatacagcgaacctaaagctatttttgtatcagaagatgagttt
ctgaatgagattaaccattttgtatgggcagactttacttcagaagtattaaaatcttca
cgagctgaaattcaactgaaactaacccagcaacctgtttttaataaaaactttgaatgg
ttgattcaggatctggaagataaactggaaaaaggttatgatgcatggatttcattctcc
tccgaaaaacaaaaggatcgtctggaaagcatttttgaagagcttgaaaagaatatcccg
tttaaaagttgtgcttccgaactgcatgaaggctttgtagataatgaaaataaaatatca
gtttataccgatcaccagatattcgacagataccaacggtataaagcgaaaaatgctttt
gccaaaagtgagcaacttaccttaaaggatctgatgtctctgaaagttggggactacatt
acacatattgatcatgggataggaaaatttatggggctggtaaaggtcaataacaatggt
aaagttcaggaatgttttaaattgtcttataaaaatggagatttattatatgtcagtatt
catgcacttcataaaatatcaaaatataacggacctgacggaaaagacattgtgttgagt
aagctgggatcttccgcatggaaatccctgaaacaaaaaaccaaagcaagagttaaacag
attgcatttgaccttatcaagctttatgcacaaaggaaaagtgcaaaaggttttgcctat
tcaccggacggatatatgcagaatgagttggaagcttcctttatttatgaagatactccg
gatcaggaaaaagcaacaatggacgtaaaagcagatatgcaggcagatacagtaatggat
cgattaatctgcggagatgtaggatttggaaaaacagaagttgctatccgtgctgccttt
aaagctgctgtagacgggaaacaggtagcgcttttggttcctacaacaattctggcattt
cagcattacagaagttttaaagaaaggcttaaagacttccctgttgaggtctcttatctt
aaccgcttcagaacagcaaaacagaagaaagaaacgttggaaggattagcttccggcaaa
atagatattgtaattggtacacatcaattggtaggcgccagcgtaaagtttaaagatctg
ggattactgattattgatgaggaacataaattcggcgtagctataaaggataagctgaag
actatgaaaaccaacattgatactttaacgcttactgcaactcctatcccgagaacatta
cagttttctctgatggcagcgcgagatctttcggttattaaaacaccaccgcctaaccgg
cagcctgtggatactaaattggtaggctttaacgaagaaactctgagagatgctattagt
tatgaattacaaagagacggacaggtttattttattaataacagaatagaaaatcttaaa
gaaattgcaggtcttatccagagattggttccggatgccagagttattacggggcatgga
caaatggatggtaaacagctggaagcaaatatgatggattttatggagggcaaatatgat
gtgttggtttctactacgattgtggaaagcggattggatgtacctaatgccaatacgatt
ttcatcaacgatgcacagcggtttggtatggcagacttgcaccagatgcgtggacgtgta
ggacgtagtaacagaaaggcattttgttatcttattactccaccaatggatttggtttct
tcagatgctcgtaaacgtttggaagctattgaacagttttcggatttgggtagcggtttc
catattgcgatgaaagatttagaaattcgcggtgccggagatttgttaggaggagatcag
agcggttttatcaatgaaatgggcttcgatacctatcagaaaattatgcaggaagctctg
gaagagctgaaggatgaagatatggaaggccttttccaaaatgaagaagagcgcaaaaag
cttttcaactctgttaaggatgtgaatattgataccgatttagagctgatgcttccggat
gattatgtaaatagtacagaagagcgattgttgttatatcaaaaactggcggatgtaagg
aacgctgcagagcttagtcgtttcgaatatgagttgaatgaccgtttcggggcattacca
aaagaagcgattaacttactgaagagtattgaactgaaatggttggctgcagatatagga
tttgataagatagtgatgaaaaacggaatcttccttgggtactttccgggtaatcctcaa
gataagttttatcagagtgatcgatttaaaaagattattcaataccttggttccaatcct
caacatgcacagttaaaagaaaagcattcaccagaagggaatcagctaatgatgcgtaaa
gataagattagtaatgtggatgaggttaatgctttgctaaatagtatattggcataa
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