Elizabethkingia bruuniana: AYC65_19950
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Entry
AYC65_19950 CDS
T05037
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
egm
Elizabethkingia bruuniana
Pathway
egm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
egm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AYC65_19950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
egm03021
]
AYC65_19950
03400 DNA repair and recombination proteins [BR:
egm03400
]
AYC65_19950
Enzymes [BR:
egm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AYC65_19950
Transcription machinery [BR:
egm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AYC65_19950
DNA repair and recombination proteins [BR:
egm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AYC65_19950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
RnfC_N
Biotin_lipoyl
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AQX87497
UniProt:
A0A7T7ZZT0
LinkDB
All DBs
Position
complement(4298122..4302384)
Genome browser
AA seq
1420 aa
AA seq
DB search
MSKNKTSRFSKITIGLASPESILQESRGEVLKPETINYRTHKPERDGLFCEKIFGPVKDY
ECACGKYKRIRYKGIVCDRCGVEVTEKKVRRERIGHISLVVPVAHIWYFRSLPNKIGYLL
GLPSKKLDMIIYYERYVVIQQGIARKADGSDFDEMEFLTEEEYLDTLDTLPQENQYLDDS
DPNKFVAKMGAEAIEEMLRRIDLDALSYDLRHRAHNESSKQRRTEALKRLSVVEALRGAN
TRMINRPEWMVMRVLPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLLEIKA
PEVILRNEKRMLQEAVDSLFDNTRKSSAVKSESNRPLKSLSDSLKGKQGRFRQNLLGKRV
DYSARSVIVVGPSLQLHECGLPKDMAAELYKPFIIRKLIERGIVKTVKSAKRIIDRKEPV
VYDILENVMKGHPVLLNRAPTLHRLGIQAFQPKMIEGKAIQLHPLVTTAFNADFDGDQMA
VHLPLGPEAILEAQLLMLGSQNILNPANGSPITVPSQDMVLGLYFMTKEAHSTDTNKVKG
EGLAFYSPEEVEIAYSEGQVSLNAKVKCRLPVKENGELVTRLTPTTVGRILFNQIVPKQV
GYIDELLTKKSLRNVIGRILDETDFPTTVKFLDDMKDLGYTNAFKGGLSFSLGDIVVPAE
KKTMIASAVENVDEIKANYNMGLITDTERYNQVIDVWTNTNAKLTEMIMDRMKSDQGGFN
SVFMMLDSGARGSKEQIRQLSGMRGLMAKPQKAGSVGAEIIENPIVANFKEGLSILEYFI
STHGARKGLADTALKTADAGYLTRRLVDVAQDVIVTVDDCGTLRGVEITPLKKNDEIVEK
ISERVLGRVSLHNIYDPETDELLVEADQLIDEKLAKKIEVAGIETVEARSPLTCETKRGI
CAKCYGRNLATGKMIHMGEAVGVIAAQSIGEPGTQLTLRTFHQGGTAGNISENPSIVAKR
DGIVEMDEVRTIKSEGEDGNTTDIVVSRSTEFRLVMDNETRTVIMTANVPYGAELAVKPG
DKVSKGDLICKWDPYNAVIIAETSGKVEYEDIIQGVSFQLEIDEQTGFEEKVISDSRNKK
AVPTLRVVDAKGVEQKSYNLPVGAHLMVNDGEKIKAGKVLIKIPRKSAKAGDITGGLPRV
TELFEARNPSNPAVVTEIDGVVSYGKIKRGNRELVVEAKTGEIKKYLVKLSNQILVQEND
FVRAGSPLSDGSVTPDDILSIKGPTAVQEYLVNEIQEVYRLQGVKIDDKHFEIIVRQMMT
KVEIVDGGDTQFLEGSLEHKNDFIEENERVFGLKVVINPGDSKEFKSGQMITARELRDEN
SKLKREDQELVEVREALPATAQPVLQGITRAALQTKSFMSAASFQETTKVLNEAAVSGKV
DDLNGLKENVIVGHRIPAGTGLKQYQNIIVGSTKEFEDIN
NT seq
4263 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaaataaaacaagtagatttagtaaaatcacgattggtttagcttctccagag
tctattcttcaggaatcaagaggagaggttctaaaaccagaaacgattaactatcgtaca
cacaaacctgaaagagatggtttgttctgcgaaaaaatattcggtcctgtaaaggattac
gaatgtgcttgtggtaaatataaaagaatccgttacaagggtatcgtttgcgaccgttgt
ggggttgaagtaactgagaaaaaagtaagacgtgagcgtatcgggcacatcagcttggtt
gttcctgttgcacacatctggtatttccgttctttacctaacaaaattggttacttacta
ggtttaccttccaagaaattggatatgattatctactacgaaagatatgtagtaatccaa
caaggtatcgctagaaaagctgatggttccgatttcgacgaaatggaattcttaactgaa
gaagaatatcttgatactttagatacgcttccacaagaaaaccaatacctggatgattca
gaccctaacaaattcgttgcgaagatgggtgctgaggctatcgaggaaatgttgagaaga
atcgatcttgatgcgctttcttatgacctaagacacagagcacacaacgaatcttcaaaa
caaagaagaactgaagcattaaagagactttctgttgtagaagcattgagaggtgctaat
acaagaatgatcaaccgtcctgagtggatggtaatgcgtgttcttccggttataccacca
gaattaagaccactagtaccattggatggtggacgtttcgctacttccgacttaaatgac
ctttacagaagagttatcatcagaaataaccgtctgaagagacttttagagatcaaagct
ccggaagtaatcttaagaaacgagaagcgtatgcttcaggaagcagtagattcattattc
gataacaccagaaaatcttctgctgttaagtctgaatctaacagaccattgaaatctctt
tctgattcattgaaaggtaaacaaggtcgtttccgtcagaacttattaggtaaaagggtt
gactactctgctcgttcggtaattgttgtaggtccaagcttgcaactacacgagtgtggt
cttccaaaagatatggcagctgagctttacaaaccatttatcattagaaaactaattgaa
agaggtattgtaaaaactgtaaaatctgctaagagaatcatcgacagaaaagaacctgtt
gtttatgatatcttagaaaacgtaatgaaaggacacccggttcttctgaacagggcacct
acccttcaccgtttaggtatccaggcattccagcctaagatgatcgaaggtaaggctatc
caacttcacccactagtaacaacggcattcaacgccgacttcgatggtgaccagatggca
gtacacttaccactaggtcctgaagctatcctggaagctcagttattgatgttaggttcc
caaaacatcctaaaccctgcgaatggttctccaattacggtaccttctcaggacatggta
ttgggtctatacttcatgaccaaagaagcgcattcaacagatacaaacaaagtaaaagga
gaaggcctggcattctattcacctgaagaggtagagattgcttattcagaaggacaagta
tcgttgaacgctaaagtaaaatgccgtttaccagttaaagaaaacggtgaattagtaaca
agactgactcctacaactgttggtagaatcctgttcaaccagattgtaccaaaacaagta
ggttatattgatgagttattgactaagaagtcattaagaaacgttatcggtagaattttg
gatgaaactgatttccctactactgtgaagttccttgatgatatgaaagatcttggttac
accaatgcattcaaaggaggtctttcatttagccttggagatatcgtggttccagctgaa
aagaaaaccatgattgctagtgctgttgaaaatgtagatgagattaaggctaactataac
atgggtcttatcaccgatactgaacgttacaaccaggtaatcgacgtttggacaaatacc
aatgcgaagcttactgaaatgattatggacagaatgaaatctgaccaaggtggtttcaac
tcagtatttatgatgcttgactctggggcgaggggttctaaggaacagattcgtcagtta
tccggtatgagaggtctaatggcaaaaccacaaaaagctggttcagttggggcggagatt
atcgaaaacccgattgtagctaactttaaggaaggtctttccatcttggagtactttatc
tctacccacggtgcacgtaagggtcttgcggataccgctcttaagactgccgatgcgggt
tatctaactcgtcgtttggtagacgttgctcaggacgttatcgttactgttgacgactgt
ggtacattaagaggtgtggagattacgccattgaagaaaaatgacgaaatcgttgagaaa
atctctgaaagagtattaggtagagtttctcttcacaatatctacgatcctgaaaccgat
gaattattggtagaagcagatcaacttattgatgagaaattagcgaagaaaattgaagtt
gcaggtatcgaaactgtagaagctcgttctccgttaacttgtgaaactaagagaggtatt
tgtgcgaagtgttatggtagaaacctggcaacaggtaagatgatccacatgggtgaagct
gtaggtgttatcgctgcacaatccattggtgaacctggtacacagttaacattgagaacc
ttccaccaagggggtactgcgggtaacatttctgaaaacccatctattgttgcaaaacgt
gatggtatcgtagaaatggacgaagtaagaaccattaagagtgagggtgaagatggtaac
acaacagatatcgttgtttcccgttctactgaattccgtttggtaatggataacgaaacc
agaacagtaattatgacggcgaacgtaccttatggtgctgagcttgctgtaaaacctggt
gacaaagtaagtaaaggagatcttatctgtaagtgggatccgtataacgcggtaatcatt
gctgaaacatcaggtaaggttgaatacgaagatattattcaaggggtttctttccaattg
gaaattgatgaacaaaccggtttcgaggaaaaagtaatctctgattccagaaacaaaaaa
gcagtacctactcttagagtggtagatgctaaaggtgttgagcagaaatcttacaacctt
ccggtaggtgcccacttgatggttaacgatggtgagaaaattaaggctggtaaagtctta
atcaaaatcccaagaaaatctgctaaggcaggggatatcaccgggggtcttccaagagtt
accgaattattcgaagctcgtaacccatctaacccagcggttgttactgaaatcgacggt
gtagtatcttacggtaaaatcaagagaggtaaccgtgaacttgttgttgaagctaaaact
ggtgagatcaagaaatatcttgtaaaattatctaaccagatccttgttcaggaaaatgac
ttcgtacgtgcaggttctccactttctgatggatccgttactccggatgacatcctaagc
attaaaggaccaactgcggtacaggaatacttagtaaatgagattcaggaagtttaccgt
ctacagggggtaaaaattgatgataagcacttcgagatcatcgttcgtcagatgatgact
aaagtagaaatcgttgatggtggtgatactcaattccttgaaggcagccttgagcacaag
aatgacttcatcgaagaaaacgaaagagtatttggtcttaaagtagttattaacccagga
gattctaaagaattcaaatctggtcagatgatcactgcaagagaactaagagacgagaac
tctaagttgaagcgtgaagatcaggaattagttgaagtaagagaagctttaccagctaca
gcacagcctgtattacaaggtattacaagagcagctcttcaaactaaatctttcatgtct
gcagcttccttccaggaaactacaaaagtacttaacgaggcagcagtgtctggtaaagta
gatgatctgaatggtcttaaagagaatgtaattgtaggtcacagaatccctgcaggtaca
ggtcttaagcaatatcagaatatcattgtaggttctacaaaggaatttgaggatataaat
taa
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integrated database retrieval system
