Aurantiacibacter gangjinensis: BMF35_a0467
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Entry
BMF35_a0467 CDS
T04581
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
egn
Aurantiacibacter gangjinensis
Pathway
egn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
egn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BMF35_a0467
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egn03019
]
BMF35_a0467
03400 DNA repair and recombination proteins [BR:
egn03400
]
BMF35_a0467
Enzymes [BR:
egn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BMF35_a0467
Messenger RNA biogenesis [BR:
egn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BMF35_a0467
DNA repair and recombination proteins [BR:
egn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BMF35_a0467
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
HHH
SecA_DEAD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
APE27296
LinkDB
All DBs
Position
I:complement(469998..471839)
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AA seq
613 aa
AA seq
DB search
MEMRLSAVCGRRGTCHMQAMAPAVDMEAARDALRRIYGFADFRGRQADVIARVLAGQSTL
AVMPTGAGKSLTYQLPATLLEGTCVVISPLIALMHDQLRSARANGISAATLTSVDEDWRE
TLDAFRASELDLLYVAPERASQQGFRDLLSSAKLSLFAVDEAHCVSEWGHDFRPDYRQLR
PLMDAFPDVPRLALTATADEHTRADILAQLGIPEEGLVVAGFDRPNIRYRINPREALPRQ
LARLCAETPGPGIVYAPTRRKVEQLAEQLAELTGRPVLPYHAGLPADVRAKNQSAFVASE
DMVIVATIAFGMGIDKPDVRFVAHAGVPKSIEAYYQETGRAGRDGDPAEAVMLWSAGDFA
QARMRLGEVGSARQQGERQRLDALAGLVETPGCRRAVLLRHFGENPPETCGNCDNCLDPP
SVIDVTELARKFLSAVYRTGQSYGFGHIQKVLTGSADERVTQRGHDKLSVYGIVDGEDAR
LLQPVARALQVRGDLTQTEHGGLCLSGDVREILAGNTDVVIAKPPERGRGRRRRGDSTPN
PVGDPLFDALRALRRDLAADAGVPPYVVFHDAALRAMAAGRPANLSEMSQIPGIGEKKLA
AYGDAFLKAIRDN
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
gtggaaatgcgcttgtcggcggtatgcggcaggcgcgggacctgccacatgcaggccatg
gctccggcagtggatatggaggcggcgcgagacgcgctacgccgcatttatggctttgcc
gattttcgcgggcgtcaagccgacgtgatcgcgcgcgtgctggcgggccagagcactctc
gcggtcatgccgacaggcgcgggcaagtcgctcacctaccagctgcccgccacgctgctg
gaaggcacatgcgtcgtcatctctccgctgattgcactgatgcacgaccagctgcgcagc
gcgcgcgccaatggcatcagcgccgccacgctcaccagcgtggacgaggactggcgcgaa
acgctggacgcatttcgcgcaagcgagctggacttgctttatgtcgcgcccgagcgtgca
agccagcagggctttcgcgatttgctctccagcgcaaagctgtctctcttcgccgtggac
gaggcgcattgcgtttccgaatggggacacgatttccgcccggattatcgtcagctgcgc
ccgctgatggacgctttccccgacgtgccgcgcctcgcgctgacggcgacggcggacgaa
catacacgcgccgacatcctcgcccagctcggcattccggaagaagggctggtggtcgcg
ggcttcgacagacctaatatccgctaccgcatcaatccgcgcgaggcgctgccccgccag
cttgcgcggctatgcgcggaaacgccgggtccgggcatcgtctacgcgcccacgcggcgg
aaggtggagcaattggccgagcaattggccgagctgaccggcaggcccgtgctgccgtat
cacgccggtcttccggcagatgtgcgcgcaaaaaaccagtccgccttcgtcgccagcgag
gacatggtgatcgtcgccaccatcgctttcggcatggggatcgacaagcccgatgtgcgc
ttcgtcgcccatgctggcgtgcccaagagtatcgaggcctattatcaggaaacaggccgc
gcgggccgcgatggcgatccggcagaggcggtcatgctctggagcgcgggcgattttgcg
caggcgcgcatgcgattgggcgaagtcggcagtgcgcgccagcaaggcgaacgccagcgg
ctggacgcgctggcgggactggtggaaaccccgggctgccgccgcgctgtgctgctgcgc
cattttggcgagaatcctcctgaaacctgcggcaattgcgacaattgcctcgatccccca
agcgtgatcgacgtaaccgagctggcgcgcaaattcctctccgccgtctatcgcaccggg
cagagttacggcttcggacatatccagaaagtgctgaccggttctgccgatgagcgcgtg
acccagcgcgggcatgacaagctgtcggtctatggcatcgtcgatggcgaggatgcacgg
ctgttgcagccggtggcgagggcgttgcaagtgcgcggcgacctgacgcagacagagcat
ggcggcctctgtctgtcgggcgatgtgcgcgagatacttgccggaaatacggacgtcgtc
atcgcgaaaccgccggagcgcgggcgcgggcgcagacggcgcggtgacagcacgcccaat
ccggtgggcgatccgctgttcgatgcactgcgggcgttgcgtcgcgacctggctgcggat
gcaggcgtgccgccttacgtggtgttccacgacgcggccttgcgcgcgatggcagcgggg
cggccagccaatctttctgaaatgagccagatccccggtatcggcgagaagaagctggcc
gcttatggcgacgctttcctcaaggccattcgcgacaattga
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