Aurantiacibacter gangjinensis: BMF35_a1937
Help
Entry
BMF35_a1937 CDS
T04581
Name
(GenBank) 3'-to-5' exoribonuclease RNase R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
egn
Aurantiacibacter gangjinensis
Pathway
egn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
egn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BMF35_a1937
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egn03019
]
BMF35_a1937
03016 Transfer RNA biogenesis [BR:
egn03016
]
BMF35_a1937
Enzymes [BR:
egn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BMF35_a1937
Messenger RNA biogenesis [BR:
egn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BMF35_a1937
Transfer RNA biogenesis [BR:
egn03016
]
Prokaryotic type
tRNA degradation factors
BMF35_a1937
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
S1
WHD_RNase_R
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
APE28766
UniProt:
A0A0G9MQB0
LinkDB
All DBs
Position
I:1985082..1987367
Genome browser
AA seq
761 aa
AA seq
DB search
MQRKQNTRKFEGLPSKDQILEFIKNADGPTGKREISKHFRLKGQEKIALKARLKDMAEEG
LIDGKKTAFHRMGGVPKVTVLRVVEIDEGEPIAIPESWQPDDATPPPRLRVIEKKKQAAL
RVGDRILARTEERGKGFLAHPMKKLPSEEGAMLGVVEIDKSGQAWLAPVDKKIRTSAKIS
DRGQAEAGQLVLAEPAGRGRNASVKVTEVLGDPLAPKSYSLIAIHKYGIPNHFSDEVLQE
AEAAAKLSLSEEKREDLRHLPIVAIDPADARDHDDAIWAEPDGKGGFNALVAIADVSFYV
RPGSKLDREARRRGNSVYFPDRVVPMLPEVLSADVCSLRADEDRAAMACHLSIDKHGQIT
GWRFTRALVRIAEVIPYEQAQARVDDGTAGDNLQHLWDAWKLLAKARADRDPLDLDLPER
RVVLDDEGKIAEIAVRERLDAHRVVEDFMIAANVAAAKALESKTQPVVYRVHEPPTREKL
IALREYFDSIGKKLALGQVITPGLFNRMMKDVTDAGEKALVMEAVLRSQTQAYYGPANAG
HFGLSLGSYAHFTSPIRRYSDLLVHRALVDGFGLEQPKPNIKSVPASSGLSDQDRSDLGK
ITDAISITERRAMEAERDTIDRYVAAWLSARVGEVFPCRITGVQKFGFFATIVGLGGDGL
VPISTLGREYFRYNEGAHALIGEDSGQTYTVGDRLELRLGEANPLTGALKFELPDSAGGG
KSVEPRGRRPEKRSRRDRQGKHSVGKRGRPGNIRHQGRRKK
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
atgcaaagaaaacagaacacacggaagttcgagggacttccgagcaaagaccaaatcctt
gaatttatcaaaaacgccgatggccccacgggcaagcgcgagatttccaaacatttccgc
ctgaaagggcaggaaaagatcgcgctgaaagcgcggctgaaagacatggccgaggaaggt
ctgatcgacggcaagaagaccgcttttcaccgcatgggcggcgtccccaaggtcaccgtg
ctgcgggtggtcgagatcgacgagggcgaaccaatcgccattccggagagctggcagccc
gacgatgccacaccgccgccgcgactgcgggtgatcgaaaagaaaaagcaggccgcgctg
cgcgttggcgaccgtattcttgcccgcaccgaagagcgcggcaagggctttctcgcccat
ccgatgaagaagctgccttccgaagaaggcgcgatgctgggcgtggtcgagatcgacaaa
agcgggcaggcctggctggccccggtcgacaagaagatccgcacctctgccaagatcagc
gatcgcgggcaggcggaagcgggccagctggtgctggcggaaccggccggccgcgggcgg
aatgcgagcgtgaaagtgacggaagtgctcggcgacccgctggcgcccaagagctacagc
ctgattgcgatccacaaatacggcatcccgaaccacttctccgacgaggttttgcaagag
gccgaagcggcggcaaaactctccttgagcgaagagaagcgcgaagacctgcgtcatctt
cccatcgtcgccatcgacccggccgatgcgcgcgaccatgacgacgcgatctgggccgaa
ccggacgggaagggcggcttcaacgcgctcgtcgcgattgccgatgtatccttctacgtg
cgccccggcagcaagctcgaccgcgaggcgcggcggcgcggcaattcggtctatttcccc
gaccgggtcgtgccgatgctgcccgaagtgttgtccgccgatgtctgctcgctgcgtgcg
gatgaagaccgcgcggcgatggcgtgccatctttccatcgacaagcatgggcagattacc
ggatggcgctttacccgcgcgctggtccgcattgccgaagtcattccatatgaacaggca
caggcccgcgtggatgacggcacggcgggcgacaacctgcagcacctctgggatgcctgg
aagctgctcgccaaggcccgcgccgaccgcgacccgcttgatctcgacctgccggagcga
cgcgtcgtgctcgacgatgaaggcaaaattgccgagatcgccgtgcgcgagcggctcgat
gcgcaccgcgttgtcgaagatttcatgatcgcggccaatgtcgcggcggccaaggcgctg
gaaagcaagacccagcccgtcgtctaccgagttcacgagccgccgacccgcgagaagctg
atcgcgctgcgcgaatatttcgacagcatcggaaagaagttggcattggggcaggtcatc
accccgggccttttcaaccgcatgatgaaggatgtcaccgatgcgggcgaaaaggcactg
gtgatggaggccgtgctgcgcagccaaacgcaggcctattatgggcccgccaatgccggg
catttcggcctgtcgctgggcagctacgcgcacttcacgtcgcccatccggcgctattcg
gacctgcttgtccaccgcgcgctggtcgatggtttcgggctggagcaacccaagccgaac
atcaaaagcgtgcccgccagctccggcctttcggatcaggatcgcagcgatcttggcaag
attaccgatgcgatcagcatcacggaacgccgcgccatggaggcggagcgcgacacgatc
gaccgctatgtcgctgcatggctttccgcacgcgtcggagaagtcttcccctgccgcatc
accggcgtgcagaagttcggcttcttcgccaccatcgtagggctgggcggggacggcctc
gtgccgatctccacgctgggccgcgaatatttccgttacaacgagggtgcgcatgcgctg
atcggcgaggatagcgggcagacctacactgtcggcgacaggttggagcttcgcctgggc
gaggccaatccgctcaccggcgcgctgaaattcgagctgcccgatagcgcaggcggcgga
aaaagcgtcgagccgcgcggtcggcggccggagaagaggtcccgccgtgacaggcagggc
aagcacagcgtcggcaagcgcggtcgcccgggcaatatccgccaccagggtcgccgcaaa
aagtag
DBGET
integrated database retrieval system
