Elizabethkingia ursingii: BBD34_02090
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Entry
BBD34_02090 CDS
T05036
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ego
Elizabethkingia ursingii
Pathway
ego03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ego00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BBD34_02090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ego03019
]
BBD34_02090
03400 DNA repair and recombination proteins [BR:
ego03400
]
BBD34_02090
Enzymes [BR:
ego01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BBD34_02090
Messenger RNA biogenesis [BR:
ego03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BBD34_02090
DNA repair and recombination proteins [BR:
ego03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BBD34_02090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
Helicase_C
RQC
HRDC
RecQ_Zn_bind
ResIII
HTH_40
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
AQX07506
UniProt:
A0AAJ3TQD0
LinkDB
All DBs
Position
complement(465061..467268)
Genome browser
AA seq
735 aa
AA seq
DB search
MNTKSANIAESLKKYFGFTTFKGYQEQIISSLLEGSDVFVLMPTGGGKSLCYQLPALMSE
GTAIVVSPLIALMKNQVDAVNGLSSEEGVAHVLNSSLNKTQTKTVMDDIRNGRTKLLYVA
PESLIKEEYIDFFKEVPISFFAIDEAHCISEWGHDFRPEYRNLKSIIDKIADVPVIALTA
TATPKVQDDIQKTLGMTNALVYKESFNRPNLFYEVRPKVNIDKEIVKFIKAQNGKSGIVY
CLSRRKVEEFAQLLQVNGLNALPYHAGLDAKTRVINQDKFLMEEVDVIVATIAFGMGIDK
PDVRFVIHYDIPKSLESYYQETGRAGRDGGEGHCIAFYDPKDIEKLEKFLAQKPVSEREI
GLQLLNEVVGYVETSMSRRQYLLYYFGEKFDPVNGAGAKMCDNSVNPPVLKDASEDLTKI
LSLVNDLGQKFRAKDLVAVIAGKENAVTKSYKLENNHHFGSGKGKEDNYWKSIIRQAVVQ
DFLLKDIETYGVLKLTKKGLDCIDGKLKSKFEIAEDRVYNLAETAKISSEVSLGNTARGL
DDKLFSLLKEVRKKVAQKNNIPPYTVFQDPSLEDMTVQYPISIDEISKIYGVGEGKAKKF
GKEFADFIKKYVEENDIDRPDDMVLKQVANKSSHKVFIIQNTDKKIDLEDIAKAKNLTMD
ELLSEMESIVYQGTKLNIDYYIDENFDEDIVEGFMEFMMESESDSMKTLCTEFSDELSDE
EIRMLRIKFISDVAN
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atgaatacaaaatctgcgaacatagcggagtcattgaaaaagtattttggctttacaaca
ttcaaggggtatcaggaacagattatatcttcacttttagaaggaagtgatgtctttgtt
ctgatgccaacaggaggaggtaaatcattatgctaccagttgccggcattaatgagcgag
ggaacagctattgtggtttcaccactaatagcactaatgaaaaatcaggtagatgcggtc
aacgggctttcctcggaagagggagtagcacacgttcttaattcttcgttgaacaaaact
cagacgaaaaccgtgatggatgatatccggaacggaaggacaaagctgctttatgtagct
ccggaatcgttgattaaagaggaatatatagatttctttaaagaggttcctatttcgttc
tttgcaatagacgaggcgcactgtatttcagaatggggacatgatttccgtccggaatac
agaaatttaaaaagtattatcgataaaattgcggatgttcctgttattgcactaacggct
acagcaactccgaaagttcaggatgatattcagaaaacacttggtatgacgaatgctctt
gtatataaagagtctttcaacaggcccaacttattttatgaagtacgtccgaaagtaaac
atcgataaagagattgttaaatttatcaaagcccaaaatggtaaatcaggaattgtttac
tgtctcagcagaagaaaagtagaagaatttgcacaactgcttcaggtgaacggtcttaat
gcattgccatatcatgctggcttagatgcgaaaacacgtgttattaatcaggataaattc
ctgatggaagaggtagatgttattgtagcaactatagcattcgggatgggaattgacaag
ccagatgtaagatttgtaattcattacgatatacctaaaagcttggaaagctattatcag
gaaactggacgtgccggaagagatggaggagaaggacattgtattgctttctatgatccg
aaggacatcgaaaagcttgaaaagtttctggctcagaaaccggtttcggaaagagagatt
gggctacaactacttaacgaagtagtgggatatgttgaaacatccatgagccgccgtcag
tacctactgtattattttggtgaaaagtttgatccggtaaacggagctggagccaaaatg
tgtgataactcagtaaacccacctgtattaaaagatgcaagtgaggatctgacgaaaatt
ttgagtctggtaaatgatttgggacaaaaattcagagcaaaagatctggtcgctgtaatt
gcaggtaaagaaaatgctgtaaccaagtcttataaacttgaaaataatcaccactttggt
agtggaaaaggcaaggaggataactactggaaatctattatccgacaggcagtagttcag
gattttttattaaaagatattgaaacctacggtgtactaaagcttacgaaaaaaggctta
gactgtatcgatggtaagctgaagtcgaaatttgaaatagcagaagacagagtctataat
ctggcagaaacggctaaaatatcttccgaagtttcactaggaaatacagcgcgcggactg
gatgataaattgtttagcttactaaaagaagtaaggaagaaagtcgcccagaaaaataat
attccgccatatacggtattccaggatccgagtttggaggatatgacagtacaatatcct
attagtatagacgagatttctaagatatatggagtaggagaaggaaaagctaaaaaattc
ggaaaggaatttgcggattttataaaaaaatatgttgaggaaaacgatatcgaccgtccg
gacgatatggtattaaagcaggtagcaaataaatccagtcacaaggtttttattattcag
aatacggataagaaaattgatttggaggatattgctaaagctaaaaatctgacaatggac
gaactgctttccgaaatggaaagtatcgtttatcagggaacgaaactaaatatcgattat
tatatcgatgagaattttgatgaggatatcgtagaagggtttatggaatttatgatggag
tctgagagcgatagtatgaagactttatgcactgaattttctgacgaactttccgacgag
gaaatccgaatgctgcgtataaaatttattagcgatgtagcgaactaa
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