Elizabethkingia ursingii: BBD34_06250
Help
Entry
BBD34_06250 CDS
T05036
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
ego
Elizabethkingia ursingii
Pathway
ego02020
Two-component system
ego02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ego00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
BBD34_06250
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BBD34_06250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ego03021
]
BBD34_06250
Transcription machinery [BR:
ego03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BBD34_06250
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
Med9
Carn_acyltransf
Ubiquitin_PRKD1_N
LacI
Motif
Other DBs
NCBI-ProteinID:
AQX08271
UniProt:
A0AAJ3TMV9
LinkDB
All DBs
Position
complement(1365828..1367291)
Genome browser
AA seq
487 aa
AA seq
DB search
MLKQNLQIKLGQKMAPQQIQLMKLIQLHTLEFEEELQRELEENPALEKAVDEAKEDEYSD
IDSSYDDEGTESIETDFDVNEYIFDDEPSYKTAASNYSPDDEEFDNQSLLTEGQSLYDYL
IEQIRLTKIGEEDLKIAEYIIGNLDNDGYLRRDIKSLVNDMAFSLGVYTTPENVEDVLTN
YVQKLDPPGVAARDLKECLLLQIEKKVSGNPAVSLAHNILLHQFDALSNKHYNKIMHKYD
VEEDDLKDALDEISKLSPKVGGNFDTQTITINQEIIPDFVINVKDGKVTAALNSKNAPQL
RVSDEYKEILTTYSHDKTSQEHKQAALFIKQKLDAAKWYIDAINQRQNTLMQTINAIIRL
QKDYFITGDDKSIKPMILKDVADITGFDISTISRVVKSKYADTPNGIVYLKNLFSDSLTN
DDGEEVSTKEIKNHLQDIIDKENKRKPYTDDALVGMLKDKGYNIARRTIAKYREQLNIPV
ARLRKEL
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgctgaaacaaaatttacagataaaacttggccagaaaatggcaccacaacaaattcag
ttgatgaagcttattcagcttcatactcttgaatttgaagaagaattgcaacgggagctg
gaagaaaatccggcgttggaaaaagctgtggacgaagccaaggaagatgaatattcggat
attgatagtagttatgatgatgaaggaacagagtctatagaaactgatttcgatgtgaac
gaatacatttttgatgacgaaccttcttataaaactgccgcaagtaattactcaccagac
gatgaggaattcgataaccaatcgctgcttacagaaggacagtccttatacgattacctt
atagagcagatccggttgacgaaaatcggcgaggaggatctaaaaatagcagaatatatt
ataggtaacctggataatgatggttatctgagaagagatataaagtctttggttaacgat
atggctttttcattaggagtatatacgacacctgaaaatgtagaagacgtattaaccaat
tatgtacaaaaactggatccgccaggagtagcagcaagagatctgaaagaatgtcttctg
ctccagattgagaaaaaagtaagcggaaatccggcagtgtcattagcacataatattttg
cttcaccagtttgatgctttaagtaacaagcattataacaaaatcatgcataagtatgat
gtggaggaggatgatctgaaagatgcgcttgatgaaatctctaagttatctcctaaagtt
ggtggtaatttcgatacacagacaattacaatcaaccaggaaattattccggattttgta
atcaatgtaaaggacggaaaagttacagcggcacttaatagtaagaatgctcctcagcta
cgtgtctcagatgagtataaagagattttaacaacttactcacacgataaaacatcccag
gagcataagcaggcagctttgtttatcaaacaaaagcttgatgctgcaaaatggtatata
gatgctattaatcagcgccagaatacattgatgcaaaccattaatgctattataaggtta
cagaaagattactttattaccggagatgataaaagtataaagccaatgattttgaaagat
gtggcagatattacaggttttgatatttctacaatttcccgtgtggtgaaaagtaaatat
gcagatacacctaacggaatcgtttatctgaagaatcttttctcggatagtcttacaaat
gacgatggtgaagaggtttcaaccaaagagattaaaaaccacctgcaggatattatagac
aaggaaaataaaagaaaaccttataccgatgatgcattagtaggaatgctgaaagataaa
ggatacaatattgcccgacgtactattgctaaatacagagagcagttaaatattccggta
gcaagattaagaaaagaattataa
DBGET
integrated database retrieval system