Elizabethkingia ursingii: BBD34_07075
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Entry
BBD34_07075 CDS
T05036
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ego
Elizabethkingia ursingii
Pathway
ego03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ego00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BBD34_07075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ego03021
]
BBD34_07075
03400 DNA repair and recombination proteins [BR:
ego03400
]
BBD34_07075
Enzymes [BR:
ego01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BBD34_07075
Transcription machinery [BR:
ego03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BBD34_07075
DNA repair and recombination proteins [BR:
ego03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BBD34_07075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
YqfD
Biotin_lipoyl
Motif
Other DBs
NCBI-ProteinID:
AQX08419
UniProt:
A0AAJ3N9J0
LinkDB
All DBs
Position
1543268..1547092
Genome browser
AA seq
1274 aa
AA seq
DB search
MSKTQTPKTRENQRINFSSSKGKVITPDFLDIQIQSFKEFFQLDTLPEARLDETLYKTFQ
ENFPITDSRNQFVLEFLDYLVDAPRYSIDECVERGLTYSVPLKARLKLYCTDPEHEDFQT
VVQDVYLGPVPYMTPSGSFIINGAERVIVTQLHRSPGVFFGQTYHANGTKLYYSRIIPFK
GSWMEFTTDINSVMYAYIDRKKKLPLTTLLRAIGYESDKDILQIFDLAEEVKVSKAALKK
VEGRTLAARVLNTWFEDFVDEDTGEVVSIERNEIILDRETVLEKEHLDLILESGVKTILI
HKENGNEFSIIQNTLQKDPTNSEKEAVEYIYRQLRNADPPDEETARGIIEKLFFSEQRYS
LGEVGRYRLNKKLGLNIPIDTEVLTKEDIIAIVRHLIELVNSKAEVDDIDHLSNRRIKTV
GEQLSGQFGVGLSRIARTIKERMNVRDNEIFTPIDLVNAKTLTSVINSFFGTNQLSQFMD
QTNPLSEITHKRRLSALGPGGLSRERAGFEVRDVHHTHYGRICPIETPEGPNIGLISSLG
IYAKINNLGFIETPYRKVENGKVDLNADPIYLNAEDEEAKVIAQANVELSDSGDFETDRI
IARLDGDYPVVEPGQVDLIDVAPNQISGISASLIPFLEHDDANRALMGSNMMRQAVPLLR
PQAPIVGTGLEKQVATDSRILINAEGTGVVEYVDADKITIKYERSEDEDLVNFESATKSY
KLTKFRKTNQSTTITLKPIVRVGDTVAKGQVLCEGYATEKGELALGRNLVVAFMPWKGYN
FEDAIVINEKVVREDWFTSIHVDEYSLEVRDTKLGMEELTADIPNVSEEATKDLDENGMI
RIGAEVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKADSSLRGVVINK
KLFSRNIKDKKKRTEEKLKLEEVENRYKEKFDDLRNTLLEKLNILVSGKTSQGVKNDLDE
ELIGKGVKFTQKLLSSVEDYVNVSGSDWTVDADKNELIKQLIHNYKIKYNDLQGVKNREK
FAISIGDELPAGIMKLAKVYIAKKRKLNVGDKMAGRHGNKGIVSRIVREEDMPFLEDGTA
VDIVLNPLGVPSRMNIGQIYETVLGWAGKKLGLKFATPIFDGAELDQITEYTEKAELPAY
GNTYLYDGGTGERFTQPATVGVIYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGG
QRFGEMEVWALEAFGASNILREILTVKSDDVIGRAKTYEAIAKGEAMPEPGIPESFNVLL
HELQGLGLDVRLEE
NT seq
3825 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagacacagacgccaaaaactcgggaaaaccaaagaattaacttctcctcttcc
aaagggaaagttataactcctgattttctggacattcagatccagtctttcaaggagttt
ttccagcttgatacactgccggaagctagattggatgaaactctttacaaaactttccag
gaaaactttcctattacagactcaagaaaccagtttgtattagaattccttgactattta
gtagatgcacctcgttattctatcgacgagtgtgtagaaagaggtctaacctacagtgta
ccattaaaagcaagacttaaattgtattgtactgacccggaacatgaagatttccaaaca
gtagtacaagatgtatatttaggtccggtaccatacatgactccaagtggttcatttatc
atcaacggagcagagcgtgttatcgtaactcagttacaccgttcaccgggggttttcttc
ggacaaacttaccacgcaaacggtaccaagttgtactattccagaattattcctttcaaa
ggttcttggatggaatttacaacggatatcaacagcgtaatgtacgcttacatcgatcgt
aagaaaaaattacctttaactacacttttaagagctatcggttatgagtctgacaaggat
atccttcagatcttcgaccttgctgaagaagtaaaagtttctaaagctgcacttaaaaaa
gtagaaggaagaacattagctgcgagagttttgaacacttggttcgaagacttcgtagat
gaggatacaggtgaagtagtttctatcgaaagaaacgaaatcatcttggacagagagact
gttcttgaaaaagagcacttggatcttatccttgaatctggtgtaaaaacaattcttatc
cataaagaaaatggaaacgaattctctattatccagaacactttacaaaaagaccctacc
aactccgaaaaagaagcggtagaatatatctacagacagttacgtaacgcagatccacca
gatgaggaaactgcaagaggaattatcgaaaaattattcttctctgagcagcgttattct
cttggtgaagttggtcgttaccgtctgaacaaaaaattagggttaaatatcccaattgat
actgaagttttaacaaaagaagatatcatcgctattgttagacaccttatcgaattggta
aactctaaagctgaggttgatgatatcgaccacctttctaacagaagaattaaaactgtt
ggagaacagctatcaggacagtttggtgtaggtctttccagaattgcaagaacaattaag
gaaagaatgaacgttagagataacgaaatctttacaccgatagaccttgttaatgcaaaa
acattaacatcagtaattaactcattctttggtaccaaccagctttctcagttcatggac
caaaccaacccattatcagagatcactcacaagagaagattatctgcactagggcctggt
ggtttatcaagagaaagagcaggtttcgaggttcgagatgttcaccatactcactatggt
agaatttgtccgatcgaaactccggaaggaccaaacattggtttgatttcttctctaggt
atctatgctaaaatcaataaccttggtttcatcgaaactccatatagaaaagtagaaaac
ggtaaagtagacttaaatgctgatccaatctacctaaatgcagaggatgaagaagctaaa
gtaattgctcaggcgaacgtggaactaagcgacagtggagacttcgaaacagacagaatt
attgctcgtctggacggtgactaccctgtagtagagccgggtcaggtagaccttatcgac
gttgcaccaaaccagatttctggtatttctgcatcattgattccattcttggagcatgat
gatgcgaaccgtgcgttgatgggatctaacatgatgcgtcaggccgttccattattaaga
ccacaagctccaattgtaggtacaggtttggaaaaacaagtagctactgactccagaatt
ttgattaatgctgaaggaactggtgttgtagagtatgtggatgctgataaaattacaatt
aaatacgaaagaagcgaggatgaagatttagtaaacttcgaatctgcgactaagtcttat
aaattaactaagttcagaaaaaccaaccagagtacaactattacattgaagcctatcgta
agagtaggtgacactgtagcaaaaggacaagtactttgtgaaggttatgcaactgaaaaa
ggagaactagcactaggtagaaacttagtagtagccttcatgccttggaaagggtacaac
ttcgaggatgcgattgtaatcaacgagaaagttgttcgtgaagactggtttacttctatc
cacgtagatgaatattcactagaagttcgtgataccaaattaggtatggaagaactaaca
gctgatattccaaacgtatctgaagaagctactaaagatcttgatgagaacggtatgatc
cgtatcggtgctgaggtgaagcctggtgatatccttatcgggaaaatcacaccaaaaggt
gaatctgatccaactccggaggaaaaacttttacgtgcaatctttggtgacaaagctggt
gatgtaaaagatgcttcattgaaagctgactcttcattaagaggtgtagttatcaacaag
aagttattctccagaaacattaaagacaaaaagaaaagaactgaagagaaacttaagctt
gaagaagttgaaaacagatacaaagagaaattcgatgatctgagaaatacacttcttgaa
aaacttaacattcttgttagcggtaaaacttctcagggtgtgaaaaatgaccttgacgaa
gaacttatcggtaaaggtgtgaagtttactcaaaagttactttctagtgttgaagattac
gtaaacgtaagcggatctgactggacggttgatgcagataaaaatgaattaatcaaacag
ttaatccacaactataagattaagtacaacgaccttcagggtgttaagaaccgtgagaaa
tttgcaatctctatcggtgacgaattaccagcaggtatcatgaagttagcaaaagtttac
atcgctaagaaacgtaaactgaatgtaggggataaaatggcgggacgtcacggtaacaaa
ggtattgtttccagaatcgttcgtgaagaagatatgccgttccttgaagatggtacagct
gtagacatcgttcttaacccactaggggtaccttcccgtatgaacatcggtcagatttat
gagaccgtattaggatgggctggtaaaaaactaggattgaagtttgctacaccaatcttc
gatggtgctgagctagatcagatcactgagtacactgaaaaagcagaacttccggcttac
ggaaatacctacttatatgacggaggtacaggtgaaagatttacacagcctgcgacagtt
ggggtaatctacatgttgaaactaggacacatggttgatgataaaatgcacgcacgttca
atcggaccatactcattgattacgcagcagccgttaggaggtaaagctcagttcggtggt
cagcgtttcggagagatggaggtttgggcactagaagcatttggtgcatctaacatcttg
agagaaatcttaactgtgaagtctgatgacgtaatcggtagagcaaaaacttatgaagct
atcgcgaaaggagaagcgatgcctgaaccaggtatccctgaatctttcaacgtattactt
cacgagttacaaggtctaggactagatgtaagattggaggagtaa
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integrated database retrieval system
