Elizabethkingia ursingii: BBD34_07080
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Entry
BBD34_07080 CDS
T05036
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ego
Elizabethkingia ursingii
Pathway
ego03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ego00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BBD34_07080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ego03021
]
BBD34_07080
03400 DNA repair and recombination proteins [BR:
ego03400
]
BBD34_07080
Enzymes [BR:
ego01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BBD34_07080
Transcription machinery [BR:
ego03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BBD34_07080
DNA repair and recombination proteins [BR:
ego03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BBD34_07080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
RnfC_N
Biotin_lipoyl
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AQX10714
UniProt:
A0AAJ3N9T4
LinkDB
All DBs
Position
1547207..1551469
Genome browser
AA seq
1420 aa
AA seq
DB search
MSKNKTSRFSKITIGLASPESILQESRGEVLKPETINYRTHKPERDGLFCEKIFGPVKDY
ECACGKYKRIRYKGIVCDRCGVEVTEKKVRRERIGHISLVVPVAHIWYFRSLPNKIGYLL
GLPSKKLDMIIYYERYVVIQQGIARKADGSDFDEMEFLTEEEYLDTLDTLPQENQYLDDS
DPNKFVAKMGAEAIEEMLRRIDLDALSYDLRHRAHNESSKQRRTEALKRLSVVEALRGAN
TRMINRPEWMVMRVLPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLLEIKA
PEVILRNEKRMLQEAVDSLFDNTRKSSAVKSESNRPLKSLSDSLKGKQGRFRQNLLGKRV
DYSARSVIVVGPSLQLHECGLPKDMAAELYKPFIIRKLIERGIVKTVKSAKRIIDRKEPV
VYDILENVMKGHPVLLNRAPTLHRLGIQAFQPKMIEGKAIQLHPLVTTAFNADFDGDQMA
VHLPLGPEAILEAQLLMLGSQNILNPANGSPITVPSQDMVLGLYFMTKEAHSTDTNKVKG
EGLAFYSPEEVEIAYSEGQVSLNAKVKCRLPIKENGELVTRLTPTTVGRILFNQIVPKQV
GYIDELLTKKSLRNVIGRILDETDFPTTVKFLDDMKDLGYTNAFKGGLSFSLGDIVVPVE
KKTMIANAVENVDEIKANYNMGLITDTERYNQVIDVWTNTNAKLTEMIMDRMKSDQGGFN
SVFMMLDSGARGSKEQIRQLSGMRGLMAKPQKAGSVGAEIIENPIVANFKEGLSILEYFI
STHGARKGLADTALKTADAGYLTRRLVDVAQDVIVTVDDCGTLRGVEITPLKKNDEIVEK
ISERVLGRVSLHNIYDPETDELLVEADQLIDEKLAKKIEVAGIESVEARSPLTCETKRGI
CAKCYGRNLATGKMIHMGEAVGVIAAQSIGEPGTQLTLRTFHQGGTAGNISENPSIVAKR
DGIVEMDEVRTIKSEGEDGNTTDIVVSRSTEFRLVMDNETRTVIMTANVPYGAELAVKPG
DKVSKGDLICKWDPYNAVIIAETSGKVEYEDIIQGVSFQLEIDEQTGFEEKVISDSRNKK
AVPTLRVVDAKGIEQKSYNLPVGAHLMVNDGEKIKAGKVLIKIPRKSAKAGDITGGLPRV
TELFEARNPSNPAVVTEIDGVVSYGKIKRGNRELVVEAKTGEIKKYLVKLSNQILVQEND
FVRAGSPLSDGSVTPDDILSIKGPTAVQEYLVNEIQEVYRLQGVKIDDKHFEIIVRQMMT
KVEIVDGGDTQFLEGSLEHKNDFIEENERVFGLKVVINPGDSKEFKSGQMITARELRDEN
SKLKREDQELVEVREALPATAQPVLQGITRAALQTKSFMSAASFQETTKVLNEAAVSGKV
DDLNGLKENVIVGHRIPAGTGLKQYQNIIVGSTKEFEDIN
NT seq
4263 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaaataaaacaagtagatttagtaaaatcacgattggtttagcttctccagag
tctattcttcaggaatcaagaggagaggttctaaaaccagaaacgattaactatcgtaca
cacaaacctgaaagagatggtttgttctgcgaaaaaatattcggtcctgtaaaggattac
gaatgtgcttgtggtaaatataaaagaatccgttacaagggtatcgtttgcgaccgttgt
ggggttgaagtaactgagaaaaaagtaagacgtgagcgtatcgggcacatcagtttggtt
gttcctgttgcacacatctggtatttccgttctttacctaacaaaattggttacttacta
ggtttaccttccaagaaattggatatgattatctactacgaaagatatgtagtaatccaa
caaggtatcgctagaaaagcagatggttccgatttcgacgaaatggaattcttaactgaa
gaagaatatcttgatactttagatacgcttccacaagaaaaccaatacctggatgattca
gaccctaacaaattcgttgcgaagatgggtgctgaggctatcgaggaaatgttgagaaga
atcgatcttgatgcgctttcttatgacctaagacacagagcacacaacgaatcttcaaaa
caaagaagaactgaagcattaaagagactttctgttgtagaagcattgagaggtgctaat
acaagaatgatcaaccgccctgagtggatggtaatgcgtgttcttccggttataccacca
gaattaagaccactagttccattggatggtggacgtttcgctacttccgacttaaatgac
ctttacagaagagttattatcagaaataaccgtctgaagagacttttagagatcaaagct
ccggaagtaatcctaagaaacgagaagcgtatgcttcaggaagcagtagattcattgttc
gataacaccagaaaatcttctgctgttaagtctgaatctaacagaccattgaaatctctt
tctgattcattgaaaggtaagcaaggtcgtttccgtcagaacttattaggtaaaagggtt
gactactctgctcgttcggtaattgttgtaggcccaagcttgcaactacacgagtgtggt
cttccaaaagatatggcagctgagctttacaaaccatttatcattagaaaactaatcgag
agaggtattgtaaaaactgtaaaatctgctaagagaatcatcgacagaaaagaacctgtt
gtttatgatatcttagaaaacgtaatgaaaggacacccggttcttctgaacagggcacct
acccttcaccgtttaggtatccaggcattccagcctaagatgatcgaaggtaaggctatc
caacttcacccattagtaacaacggcattcaacgccgatttcgatggtgaccagatggca
gtacacttaccactaggtcctgaagcgatcctggaagctcagttattgatgttaggttcc
caaaacatcctaaaccctgcgaatggttctccaattacggtaccttctcaggacatggta
ttgggtctttacttcatgaccaaagaagcgcattcaacagatacaaacaaagtaaaagga
gaaggcctggcattctattcacctgaagaggtagagattgcttattcagaaggacaagta
tcgttgaacgctaaagtaaaatgccgtttaccaattaaagaaaacggtgaattagtaaca
agactgactcctacaactgttggtagaattctattcaaccagattgtaccaaaacaagta
ggttatattgatgagttattgactaaaaagtcactaagaaacgttatcggtagaattttg
gatgaaactgatttccctactactgtgaagttccttgatgatatgaaagatcttggttat
accaacgcattcaaaggaggtctttcatttagccttggagatatcgtggttcctgttgaa
aagaaaacgatgattgccaatgctgttgaaaatgtagacgaaattaaggctaactataac
atgggtcttatcaccgatactgaacgttacaaccaggtaatcgacgtatggacaaatacc
aatgcgaagcttactgaaatgattatggacagaatgaaatctgaccaaggtggtttcaac
tcagtatttatgatgcttgactctggggcgaggggttctaaggaacagattcgtcagtta
tccggtatgagaggtctaatggcaaaaccacaaaaagctggttcagttggggcggagatt
atcgaaaacccgattgtagctaactttaaggaaggtctttccatcttagagtactttatc
tctacccacggtgcacgtaagggtcttgcggataccgctcttaagactgccgatgcgggt
tacctaactcgtcgtttggtagacgttgctcaggacgttatcgttactgttgacgactgt
ggtacattaagaggtgtggagattacgccattgaagaaaaatgacgaaatcgttgagaaa
atctctgaaagagtattaggtagagtttctcttcacaatatctatgatcctgaaaccgat
gaattattggtagaagcagatcaacttattgatgagaaattagcgaagaaaattgaagtt
gcaggtattgaatctgtagaagctcgttctccgttaacttgtgaaactaagagaggtatt
tgtgcgaagtgttatggtagaaacctggcaacaggtaaaatgatccatatgggtgaagct
gtaggtgttatcgctgcacaatccattggtgagcctggtacacagttaacattgagaacc
ttccaccaagggggtactgcgggtaacatttctgaaaacccatctatcgttgcaaaacgt
gatggtatcgtagaaatggacgaagtaagaaccattaagagtgaaggtgaagatggtaac
acaacagatatcgttgtttcccgttctactgaattccgtttggtaatggataacgaaacc
agaacagtaattatgacggcgaacgtaccttatggtgctgagcttgctgtaaaacctggt
gacaaagtaagtaaaggagatcttatctgtaagtgggatccgtataacgcggtaatcatt
gctgaaacatcaggtaaggttgaatacgaagatattattcaaggggtttctttccaattg
gaaattgacgaacaaaccggtttcgaggaaaaagtaatctctgattccagaaataaaaaa
gcggtacctactcttagagtggtagatgctaaaggtattgagcagaaatcatacaacctt
ccggttggtgcccacttgatggttaacgatggtgagaaaattaaggctggtaaagtctta
atcaaaatcccaagaaaatctgctaaagcaggggatatcaccgggggtcttccaagagtt
accgaattattcgaagctcgtaacccatctaacccagcggttgttactgaaatcgatggt
gtagtatcttacggtaaaatcaagagaggtaaccgtgaacttgttgttgaagctaaaact
ggtgagattaagaaatatcttgtaaaattatctaaccagatccttgttcaggaaaatgac
ttcgtacgtgcaggttctccactttctgatggatccgttactccggatgacatcctaagc
attaaaggaccaactgcggtacaggaatacttagtaaatgagattcaggaagtttaccgt
ctacagggggtaaaaattgatgataagcacttcgagattatcgttcgtcagatgatgact
aaagtagaaatcgttgatggtggtgatactcaattccttgaaggcagccttgaacacaag
aatgacttcatcgaagaaaatgaaagagtattcggtcttaaagtagttattaacccagga
gattctaaagaattcaaatctggtcagatgattactgcaagagaactaagagacgagaac
tctaagttgaagcgtgaagatcaggaattagttgaagtaagagaagctttaccagctaca
gcacagcctgtattacaaggtattacaagagcagctcttcaaactaaatccttcatgtct
gcagcttccttccaggaaactacaaaagtacttaacgaggcagcagtgtctggtaaagta
gatgatttgaatggtcttaaagaaaatgtaattgtaggtcacagaatccctgcaggtaca
ggtcttaagcaatatcagaatatcattgtaggttctacaaaggaatttgaggatataaat
taa
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