Elizabethkingia ursingii: BBD34_08565
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Entry
BBD34_08565 CDS
T05036
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ego
Elizabethkingia ursingii
Brite
KEGG Orthology (KO) [BR:
ego00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ego03016
]
BBD34_08565
Enzymes [BR:
ego01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
BBD34_08565
Transfer RNA biogenesis [BR:
ego03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
BBD34_08565
Prokaryotic type
tRNA splicing ligases
BBD34_08565
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AQX10725
UniProt:
A0AAJ3NEN8
LinkDB
All DBs
Position
complement(1896678..1898069)
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AA seq
463 aa
AA seq
DB search
MGNLKLKGKDILKIGYPNNQSVNVALEVMKRNFATKNIHYVKSLLKEILLHPENYEKDLS
FGQIAEALLLSKKTEKRMLNSQRAAFQVFGHNISEEAKNQLYTALKLPISLQGALMPDAH
SGYGLPIGGVLAVENAVIPYGVGMDIGCRMSLSILDTPVSYLDGARDKYEKALAEHTKFG
MYETHKSHIEHEIFERDTFGMIPVLRRLKAKAIKQMGTSGGGNHFVEFGEVEITEEDDQI
NLPKGKYLGILSHSGSRGLGAEIAQYYSRVAVEQCPLPKEAQQFAWLDLSTHMGLEYWTA
MTLAGDYASACHDDIHRRLVKAIGGRVKAKIENHHNFAWKEIHNGKEVIVHRKGATPANE
NELGMIPGSMTAKGFIVRGKGNSDSLYSASHGAGRAHSRGACRSLFTQSDIRKELKLKNV
TLMGGNAEEAPMAYKDIHEVMNAQSELVDILGTFQPRIVRMDK
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgggaaatttaaaacttaaaggaaaagatatattaaagattggctatcctaataaccag
agtgttaatgttgctctggaagttatgaaaagaaattttgcaactaaaaatattcattat
gtaaaatctcttttaaaagaaattttgctgcatccggaaaactatgaaaaagacttaagt
ttcggacaaatagcagaagctttattattatctaaaaaaactgaaaaaagaatgctgaat
agccaaagagctgcatttcaggttttcggacacaatatctcagaggaggcaaagaatcag
ctttatacagcgctaaaattgccaatatcgcttcagggagcattaatgcccgatgcacat
agtggctatggccttccgatcggcggtgttctggcggtagaaaatgctgtaatcccttac
ggtgtagggatggacattggctgcagaatgagccttagcatcctggatactccggtttca
tatctggacggggcaagagataaatatgaaaaagcactggcagaacataccaagttcggg
atgtatgaaacccataagtctcatattgagcacgagatttttgaaagagatactttcgga
atgattccggtgctgaggagactgaaagcaaaagctattaaacaaatgggaacatccgga
ggagggaaccatttcgtagaatttggcgaagtcgaaatcacggaggaagatgaccaaata
aaccttccaaaaggaaagtatctggggattttatcccatagtggttcccgtggtctgggc
gcagagattgcccagtattactcaagagttgctgtagagcaatgcccacttcctaaagaa
gcgcagcaatttgcatggttagaccttagtactcatatgggcttggaatattggaccgca
atgaccctggccggagattatgcttcagcctgccatgatgatattcaccgaagattggtt
aaagccataggtgggagagtaaaagctaaaatagaaaaccatcacaactttgcctggaaa
gaaattcataacggaaaagaagtgattgttcatcgtaaaggagcaactcctgctaatgaa
aatgaactgggaatgattccgggatctatgacagcgaaggggtttattgttcgcggtaaa
gggaattctgattcattgtattcagcttcacatggtgccggaagagcccattccagagga
gcttgcagaagtcttttcacacaaagtgatatcaggaaagaactgaaattaaaaaatgtg
actctaatgggaggaaatgccgaagaagctccaatggcgtataaagacattcatgaagta
atgaatgcacaaagcgaattagtagatattctggggacatttcagccaaggattgtaaga
atggacaagtaa
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