Elizabethkingia ursingii: BBD34_09335
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Entry
BBD34_09335 CDS
T05036
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ego
Elizabethkingia ursingii
Pathway
ego03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ego00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BBD34_09335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ego03019
]
BBD34_09335
03016 Transfer RNA biogenesis [BR:
ego03016
]
BBD34_09335
Enzymes [BR:
ego01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BBD34_09335
Messenger RNA biogenesis [BR:
ego03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BBD34_09335
Transfer RNA biogenesis [BR:
ego03016
]
Prokaryotic type
tRNA degradation factors
BBD34_09335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
OB_RNR_1st
Rrp44_S1
S1CSD-TOTE-2
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
AQX08831
UniProt:
A0AAJ3NDR4
LinkDB
All DBs
Position
complement(2053408..2055561)
Genome browser
AA seq
717 aa
AA seq
DB search
MPSKKRNLSKKNNDKLHDIGRLIVRFMSKKTSKIYNYKQIAEGIEFKNPRQREQVIQTLH
ILLSENKIKEVEKGKYILNIEISDTLTGVIDFNQSGNAYVKVEGVSDDVFVHQKNVKNAL
QGDTVTIVPFHFKGKKLEGAVVDVIERSRTQFVGTFQYIASKDFGFVIFDKKMINTDIFI
PKTKFNGAKDGDKVIVKMLGWDDKSKNPEGEITEVLGHPGDHETEIHSILAEYGLPYNFP
PEVEAEAQKIDRTLSEQEIARRWDMRDILTFTIDPKDAKDFDDALSLRKLENGNIEVGVH
IADVSYYVQPGTLLDQEAYDRATSVYLVDRVVPMLPEVLSNELCSLRPNEDKFTFSAVFE
LNDKAEIQKEWFGRTVINSDRRFTYEEAQERIETKEGDLTEEINLLDSLAKILRKDRMKH
GAIAFDRAEVRFNLNEESQPIGVYFKISKDANHLIEEFMLLANKKVSEFVSLTRKNEPTN
NTFIYRIHDDPDPTKLASLRDFVHTFGYKMNISNRNKISESLNKLLSEVKGKGEENMIET
LAMRSMSKAVYSTENIGHYGLAFEYYSHFTSPIRRYPDVIAHRLLQHYLDGGKSPNVAEY
EEKCKHCSQMERLAADAERDSIKFMQVKFMEKHVGETFKGVISGVTDWGIYVEIPENGAE
GLIRLRDLTDDSYMFDAKNYAIVGMTHGNTYQLGDEVEIKVVKANIIAKQLDFKLIQ
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgccgagtaagaagagaaatttaagtaaaaaaaataatgacaaattacatgatatagga
agattgattgtaaggtttatgtctaagaaaacttctaaaatctataactataaacagatt
gctgaaggcatagagtttaaaaacccaaggcaacgagagcaggttatacagacattgcat
attctgttgtcagaaaataaaataaaagaagtagaaaagggtaaatatatcctgaatatt
gaaataagtgatacccttactggcgtaatagatttcaaccaatctggtaatgcttatgta
aaagtagaaggggttagtgatgatgtatttgtacatcagaaaaatgtaaaaaatgcttta
cagggagatacagttacaatagttccgtttcattttaaaggaaaaaaactggagggagca
gtagtagatgttattgaaagaagccgtactcagtttgtagggacattccaatacattgct
tccaaggactttggttttgttattttcgataaaaaaatgattaataccgatatctttatt
cctaagactaagtttaacggcgcaaaagatggtgacaaagttattgtcaaaatgctgggt
tgggacgataaaagtaaaaatcctgaaggagaaattactgaagtccttggacatccggga
gatcatgaaacagagatccattctatacttgccgaatacgggctaccctataattttcca
cctgaagttgaagcagaagctcaaaagattgatcgaacattatcggagcaggaaattgcc
agacgctgggatatgcgtgatatacttactttcacaatagaccctaaagatgcaaaggat
tttgatgatgctctttcactgcgcaaacttgaaaatggtaatattgaggtaggagttcat
attgcagatgtatcttactatgtacaacccggaacattattggatcaggaggcttatgac
agagcaacctctgtatatcttgtagacagagtggtacctatgcttccggaggtattgagt
aatgaattgtgttcacttcgccccaacgaagataagtttaccttttcagctgtttttgaa
ttaaatgacaaagccgaaattcagaaagaatggtttggtagaacagttattaattcagac
agaagattcacttatgaagaagcacaagaaagaattgagactaaagaaggagatcttaca
gaagaaataaatcttttggattctttagcaaaaattcttcgtaaggatcgtatgaagcat
ggagctattgcgtttgacagagcggaagtacgcttcaatctgaatgaagaaagtcagcca
atcggtgtttatttcaaaatcagtaaagatgctaatcacctgattgaagaattcatgctt
ctggctaataaaaaagtatcggagtttgtttctcttaccagaaaaaacgaaccaacaaac
aatacatttatttatcgtattcacgatgatccggatcctacaaaattagcttcattaaga
gattttgtacatacttttggatataaaatgaatatttctaaccggaataaaatttcggaa
tctctgaataaacttctttctgaagtaaaaggaaaaggagaggaaaatatgattgaaact
cttgctatgcgtagtatgagtaaagccgtttattctaccgagaatattgggcactatgga
ttggcttttgaatattattcgcattttacctcccctattcgtcgttatccggatgttata
gcacatagacttttgcagcattatctggacggaggaaagtctccgaatgtggctgaatat
gaagaaaaatgcaagcattgcagccagatggaacgcttggcagccgatgctgaaagagat
tccatcaaatttatgcaggttaaatttatggagaaacatgtgggagaaactttcaaagga
gttatttctggtgttaccgattggggaatctatgtagaaatccctgaaaatggtgccgaa
ggactcataagattacgtgatcttacagatgattcatatatgtttgatgcaaagaattat
gctattgtaggcatgacgcacggaaatacatatcaattaggagacgaagtagagataaag
gttgtaaaagcgaatataattgccaagcagctggattttaaactgattcaataa
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