Elizabethkingia ursingii: BBD34_10290
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Entry
BBD34_10290 CDS
T05036
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ego
Elizabethkingia ursingii
Pathway
ego03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ego00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BBD34_10290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ego03021
]
BBD34_10290
03019 Messenger RNA biogenesis [BR:
ego03019
]
BBD34_10290
Transcription machinery [BR:
ego03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
BBD34_10290
Messenger RNA biogenesis [BR:
ego03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BBD34_10290
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Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
NACHT
AAA_25
S1CSD-TOTE-2
AAA_22
AAA
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AQX09011
UniProt:
A0AAJ3NDD1
LinkDB
All DBs
Position
2260617..2262383
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AA seq
588 aa
AA seq
DB search
MFDIESLKSKSDTELTKISKDLGIGVKKTSDINEKIYAILDFQASNPQTIKDYLGPQDKG
NDAGNEEAAQPKKRGRKPAAKAEVVKTPEEPAKPETPVKEVRKKAETTKAEVPVEEAVKV
TEETSQPEKKQRRRVTKTQPPVEAKATPEETAPEASEPVEVVAPAKKETQAVPQQKNNNQ
NNNNNNNNQNQNRQHHHNQNRNNGDAKHSEPQKKEYSFDGIVTVEGVLEILPDNYGFLRS
SDFSYISSPDDVYVSTSQIKNYGLKTGDTVKGIVRLPKEGEKYFSLQRPTEVNGRDLAYI
KDRVAFEFLTPLFPQEKFNLAGKNATLSTRIVDLFAPIGKGQRAMIVAQPKTGKTMLLKD
IANSISANHPEAYMMVLLIDERPEEVTDMQRSVNAEVIASTFDEAADKHVKVANLVLSKA
QRLVECGHDVVILLDSITRLARAYNTVTPASGKILSGGVDANALHKPKRFFGAARKIEGG
GSLTIIATALIDTGSKMDEVIFEEFKGTGNMELQLDRKIANKRIYPAVDLISSSTRRDDL
LLDEVTQQRMWIMRKYLADMNPVEAMEFVKKHMQSTVNNEEFLMSMNK
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgtttgacattgaaagtctaaagtcaaaatcggataccgaattgacgaaaatctcaaaa
gatttaggtattggtgtgaagaaaacttccgatattaacgaaaaaatttacgctatattg
gattttcaggcatctaaccctcaaacgattaaggattacctcggaccacaggataaagga
aatgatgccggaaatgaagaagctgcacaacctaagaaaagaggaaggaagcctgctgct
aaagctgaagttgtaaaaactccagaagaaccggctaagcctgaaacgcctgtaaaggaa
gttagaaaaaaggccgagactactaaagctgaagttcctgtagaggaagctgttaaagtt
accgaggaaactagtcagccagaaaaaaagcaaagaagaagagttacaaaaactcaaccg
cctgtagaggcaaaagcaacaccggaagaaactgctccggaagcttcagaacctgttgaa
gttgtggcgcctgccaaaaaagaaacacaagctgttcctcagcaaaaaaataacaaccag
aacaataacaacaacaataataatcagaatcagaacagacaacatcaccataatcagaat
agaaataatggcgatgcaaaacattctgaaccacagaagaaggaatatagcttcgatggt
attgtaactgtggaaggcgttctggaaattttaccagataattatggattccttagatct
tcagactttagttatatctcgtctccggatgatgtatatgtatctacaagtcagattaag
aactatgggttaaaaactggtgatacagtaaaaggtattgttcgtttacctaaagaagga
gagaagtatttctctttgcaacgtcctacagaagttaatggaagagaccttgcttatatt
aaggatagagtagctttcgaatttttaacgccacttttccctcaggagaaatttaacctg
gcaggaaaaaatgcaacactatcaacaagaattgtagacctttttgcaccaattggtaaa
gggcagcgtgctatgatcgtagcacagcctaaaactggtaaaacaatgttgttgaaggat
attgccaatagtatttctgcaaatcacccggaagcttatatgatggtcttattgatcgac
gaaagaccggaagaagtaacggatatgcagagaagtgtaaatgcagaagttattgcatct
acgttcgacgaagctgctgacaagcacgtaaaagttgccaacctggtattatctaaagct
cagagacttgtagaatgtggacacgatgtagtaatccttctggactctattactcgtttg
gccagagcttacaacacagtaactcctgcatccggaaaaatactttctggtggtgtggat
gctaatgcattgcacaaaccaaagagattctttggtgcagcgagaaaaattgaaggtggt
ggttctttaactattattgcaactgcactaattgatacaggttctaaaatggacgaagtg
atctttgaagaattcaaaggaacaggtaacatggaacttcaattagacagaaaaattgct
aacaagcgtatttatcctgctgtagaccttatctcttccagtacacgtagagatgatctg
ttactcgacgaagtaactcagcaaagaatgtggattatgcgtaagtaccttgccgatatg
aatcctgtagaagcaatggagtttgttaaaaaacacatgcagtctaccgtaaataatgaa
gagttcttaatgtccatgaacaaatag
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