Elizabethkingia ursingii: BBD34_16475
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Entry
BBD34_16475 CDS
T05036
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ego
Elizabethkingia ursingii
Pathway
ego03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ego00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BBD34_16475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ego03019
]
BBD34_16475
03009 Ribosome biogenesis [BR:
ego03009
]
BBD34_16475
Enzymes [BR:
ego01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BBD34_16475
Messenger RNA biogenesis [BR:
ego03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BBD34_16475
Ribosome biogenesis [BR:
ego03009
]
Prokaryotic type
rRNA helicases
BBD34_16475
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AQX10128
UniProt:
A0AAJ3ND97
LinkDB
All DBs
Position
complement(3625001..3626683)
Genome browser
AA seq
560 aa
AA seq
DB search
MNLFTETNLSPEILKAIGELGYESPTEIQKQTIPFISSDIRDLIALAQTGTGKTAAFSLP
ILDMVDDTSRKIQFLVLCPTRELCLQITKDIKNYSKYLPNVKTVAVYGGSSITDQIKSLR
EKPQIIVGTPGRVIDLINRKSLDFSNIQWLVLDEADEMLSMGFKDDLETIISETPETKQT
FLFSATMSKEVERISKNYLTKPHRISVGSINEVKKNIKHEYYVVGYRQKKEALKRLIDNN
PNQYSIIFCRTRMETQEVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNIDILVATD
VAARGLDVDSLTHVIHFSLPDDPEVFVHRSGRTGRAGKDGISIALIKPEESRKLKQIKSQ
SKIEIIEKIIPTGQEIIKAQVEGVFEKLFSEHENYFEFDPSLIPDLSNFTKEELVGQLLQ
FQLRDMALYYENRNDIAEQKFNGRDDSERGSRRERSRDRDRDRGDRNSRDRGDRKPKKKS
ENMVRFFFNLGKRDELKKLDVLDIINQSTKKSGKKADIGDIEILEKFTFFEVEKSFKNEV
MGNINNKKYKGREMRLEVAN
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgaatttatttaccgaaaccaatttaagtcctgaaattctgaaggctattggtgaacta
ggctacgagagccctactgaaatccagaaacaaacaataccctttatatcatcggacatc
agagaccttatcgctctggcgcagacgggtaccggaaaaactgcagctttttcccttcca
attttggatatggtagatgacacaagccgcaaaatccaatttttggtattgtgtccaacg
cgcgaattatgtcttcagattacaaaagacataaaaaactactctaaataccttcctaat
gttaagactgttgccgtatatggtggtagcagcattactgaccaaatcaaatctcttcgt
gagaaaccacaaattattgtgggtactccaggacgtgttatcgatttgatcaatcgtaaa
tctttggatttttccaatatccagtggttggtattagacgaagcagatgaaatgctttca
atgggcttcaaagatgatttggaaacaatcatcagcgaaactccggaaactaaacagact
ttccttttctcagctacaatgagcaaggaagtagaacgtatttctaagaattatttgact
aaaccgcacagaatttctgtaggttctattaacgaggttaagaagaacattaagcacgaa
tattatgtagtaggatatcgtcagaaaaaagaagctttgaaaaggcttattgacaataac
ccgaaccaatattctattatcttctgtcgtacccgtatggaaactcaggaagttgctgat
ttcctaatgcaaaatggttatgcagcagatgcacttcacggagatctttctcaggcacag
cgtgatactgtaatgaaaaagttccgtttaaagaatatcgacatcctggttgctactgac
gttgctgcaagaggactagatgtggattctttaactcacgttatccatttctctttacca
gatgaccctgaagtattcgtacacagaagtggtagaactggtagagctggaaaagatggt
atttctatcgctttaatcaaacctgaagaaagccgcaagctaaagcagattaagagccaa
agcaaaattgaaattattgaaaagataattcctacaggacaagaaattatcaaagctcag
gtagaaggtgtttttgaaaagcttttctctgaacatgaaaattattttgaatttgatcct
tctttaattcctgatctttctaacttcactaaagaagaacttgttggtcagctattacag
ttccaacttcgtgacatggcattatactacgaaaaccgtaatgatattgctgagcagaag
tttaacggtagggatgattccgaaagaggaagcagacgtgaacgcagccgtgacagagac
agggacagaggagatagaaacagcagagaccgtggagatcgtaaaccgaaaaagaaaagc
gaaaacatggtacgtttcttctttaacctaggaaaaagagatgaactgaaaaaattagat
gtattggatatcattaaccaatctactaaaaaatcaggtaaaaaagctgacatcggagat
attgaaatcttagagaaattcactttctttgaagtagaaaaaagcttcaaaaatgaagta
atgggtaacattaacaacaaaaagtacaaaggcagagagatgcgtttggaggttgctaac
taa
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