Elizabethkingia ursingii: BBD34_18160
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Entry
BBD34_18160 CDS
T05036
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ego
Elizabethkingia ursingii
Pathway
ego03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ego00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BBD34_18160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ego03019
]
BBD34_18160
Enzymes [BR:
ego01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BBD34_18160
Messenger RNA biogenesis [BR:
ego03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BBD34_18160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AQX10435
UniProt:
A0AAJ3NF92
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All DBs
Position
4005353..4006699
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AA seq
448 aa
AA seq
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MITFEDFELPKNLFSALEQNGITVPTPIQLKSFKPILSGRDVMGIAQTGTGKTLAYLLPV
LKMWKYSKADNPTVLVLVPTRELVVQVTEILENLTENMTARVIGIYGGKNINTQKLLFDN
GCDILVGTPGRVLDLAIDNAISLKDVRHLVIDEFDEMLNLGFRPQLTHIFEVMRQKRQNI
LFSATMTEAVDTMLDEYFNGPEEISLAKSGTPLEKITQQGYKVENFNTKINLLKHLLESE
ESMSKVLVFANNKKHADYLFNTLDELYPDQFDVIHSNKSQNYRLRAMRKFEDAEVRGLIT
TDVMARGLDISDITHVFNFEVPEVPEQYIHRIGRTGRADKDGTAISFITKKEEALLLEIE
VLMNKELQFLDFPEEVTINPKKIESEKEEVKMKNPTKAPDITQGGGAFHDKKDKNKKINL
GGPTKRKPPKTKPANRNQQKQKAKRNKR
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atgataacatttgaggatttcgaattaccgaaaaatcttttttcggcattagagcaaaac
ggaataactgtaccaacccctattcagctgaagagctttaaacctattttgtccggacgt
gacgttatgggtattgcacaaaccggtacaggtaaaactctggcttatttattgccggtt
ctcaaaatgtggaaatattccaaagccgacaaccctacagtattggttttagtacctact
cgtgaacttgttgtacaggttacggaaatacttgaaaatctaactgaaaacatgacagct
cgtgttataggtatttatggtggtaagaatatcaatacacagaaattgttgtttgacaat
ggctgtgatattttggtaggaacaccaggccgagtactggatttagcaattgataatgca
ataagcctaaaagatgtacgccatcttgttattgatgagttcgatgaaatgctaaactta
ggattccgtccacagttgactcatatctttgaagtgatgcgtcagaagagacagaatata
ttattctctgcaacgatgacggaagctgttgatacgatgttggatgaatattttaatggt
cctgaagaaataagcttagcaaaatcgggaactccactagaaaaaattacgcagcaagga
tataaggtcgagaacttcaatactaaaataaacttgttaaaacatcttttggaaagtgaa
gaaagcatgtctaaagtattggtttttgctaataataagaagcatgcagattatcttttc
aatacattagacgagttgtatccggatcagtttgatgtaatccactccaataaatctcag
aactacaggcttagagctatgcgtaaatttgaagatgccgaagtgcgaggtcttattaca
acagacgtaatggcacgtggtcttgacatttcagatattacccatgtattcaatttcgaa
gttccagaggttccagaacaatatattcaccgtatcggtcgtacaggtcgtgctgataaa
gatggtacagcaatctctttcattactaaaaaagaagaagcattgctattggagatcgaa
gttttaatgaataaagaacttcagtttctcgatttcccagaggaagtaaccattaatcct
aaaaagatcgaatctgagaaagaggaagtcaaaatgaagaatcctaccaaagctccggat
attacgcagggtggtggagcatttcatgataagaaggataaaaataaaaaaattaacctt
ggtggacctactaaaagaaaaccacctaaaacgaagcctgctaacagaaatcagcagaaa
caaaaagccaaaagaaataagagataa
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