Eucalyptus grandis (rose gum): 104414429
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Entry
104414429 CDS
T03547
Name
(RefSeq) pre-mRNA-processing factor 19 homolog 1 isoform X1
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr03040
Spliceosome
egr04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104414429
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
104414429
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
egr03041
]
104414429
04121 Ubiquitin system [BR:
egr04121
]
104414429
03400 DNA repair and recombination proteins [BR:
egr03400
]
104414429
Enzymes [BR:
egr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
104414429
Spliceosome [BR:
egr03041
]
Complex B
Other components
Prp19 complex
104414429
Complex C
Prp19-CDC5 complex
104414429
Ubiquitin system [BR:
egr04121
]
Ubiquitin ligases (E3)
U-box type E3
104414429
DNA repair and recombination proteins [BR:
egr03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
104414429
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
Prp19
Beta-prop_EML_2
WD40_CDC20-Fz
EIF3I
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT140_1st
Beta-prop_HPS5
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_Vps41
Beta-prop_SCAP
Beta-prop_WDR19_1st
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
Beta-prop_SPT8
NBCH_WD40
Beta-prop_EIPR1
zf-Nse
WDR90_beta-prop_4th
PROPPIN
Beta-prop_RIG_2nd
RMC1_N
PEP5_VPS11_N
Beta-prop_DCAF4
U-box
Beta-prop_DCAF12
WD40_like
WDR54
Beta-prop_WDR75_2nd
zf-RING_UBOX
PAS_11
PUMA_CC
KNTC1_N
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
104414429
NCBI-ProteinID:
XP_039157118
LinkDB
All DBs
Position
8:complement(40817041..40830535)
Genome browser
AA seq
524 aa
AA seq
DB search
MNCSISGEVPEEPVVSTKSGHVFERRLIERYVSDYGKCPVSGEPLTMDDVLPVKMGKIVK
PRPLQAASIPGLLSIFQNEWDSLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK
ERDEARSLLALAERQIPMTASSDIAVNAPALSNGRKASLDEEPGYAGKKMRPGISASIIA
EITDCNLALSQQRKKRQIPSTLAPVEDLERYTQLSSYPLHKTGKPGITSLDICHSKDIIA
TGGIDTSAVLFDRSSGQIMSTLSGHSKKVTSVNFDAQGDMVLTGSADKTVRIWQGSEDGS
YNCRHILKDHTAEVQAITVHATNNYFATASLDNTWCFYEFSTGLCLTQVEGASGSEGYTS
AAFHPDGLILGTGTSNADVKIWDVKTQANVTTFSGHTGAITAISFSENGYFLATAAQDGV
KLWDLRKLKNFRTFSAYDKDTGTNSVEFDHSGCYLGLAGSDIRVYQVASVKSEWNCVKTF
PDLSGTGKVTCVKFGPDSKYIAVGSMDHNLRIFGLPSEDGAMES
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atgaactgttccatatccggcgaggtgccggaggagcccgtcgtctcgaccaagtccggc
cacgtcttcgagaggcgcctaatcgagcgatacgtttcggattatggaaagtgcccagtt
tccggggaaccacttaccatggatgatgtcctccctgtgaaaatgggaaagatagtcaag
cccagacctttgcaggctgccagcatacctgggttgctcagcattttccaaaatgaatgg
gacagcttgatgctttccaactttgcactggaacaacaactgcacacagctaggcaagag
ctaagtcatgcattgtaccagcatgatgctgcttgccgtgttattgcaagacttaagaag
gaaagggatgaagcccgatcattacttgcactggctgaaagacagatacccatgacagca
tcttctgatattgcagtgaatgctcctgccttgagcaatgggagaaaagcttctctagat
gaagagccaggctatgccgggaagaaaatgcgacctggtatttctgcaagcatcattgct
gagataacggattgtaacttagcactttctcaacagcgtaaaaagcgacagattccctct
acactggcacctgttgaggatttggagaggtacacccaactttctagttatccactgcac
aaaactggcaaaccaggcattacatctcttgatatttgtcattccaaggatatcattgca
actggtgggattgacacatctgctgtactttttgatcgatcatctggacagatcatgtct
acactatcagggcactcaaagaaggttactagtgtgaattttgatgcccaaggtgatatg
gttttaactggttctgcagataagactgtgcggatttggcaaggttctgaagatgggagc
tataactgtcggcatatattgaaagatcatactgctgaggtgcaagcaatcaccgttcat
gctacaaataactactttgcaacagcatctctcgataatacatggtgcttttatgagttt
tcaactggtttatgtcttactcaggttgaaggcgcttcaggatctgagggttatacatct
gcagctttccatcccgatggtcttatcctgggtactggcacctcgaatgccgatgttaaa
atatgggatgtaaaaacacaggcgaatgttacgacattttctggccatactggggcaatt
actgccatatctttctctgagaatggatacttccttgcgactgcagctcaggatggggtt
aagctgtgggatctgcggaagttgaagaactttcgcacgttttcggcatatgacaaagac
accgggacaaattctgttgaatttgatcatagtggatgttatcttggacttgccggctca
gatataagagtataccaagttgccagtgtaaaatcagagtggaattgtgtcaagactttc
cctgatctatctgggacaggtaaagtgacatgcgttaagttcggtccggattcaaaatac
attgctgtcggatcgatggatcacaatttgcgaatctttggattgccttcggaggatggt
gctatggaatcatga
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integrated database retrieval system
