Eucalyptus grandis (rose gum): 104416017
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Entry
104416017 CDS
T03547
Name
(RefSeq) DNA topoisomerase 3-alpha isoform X1
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr03440
Homologous recombination
egr03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
104416017
03460 Fanconi anemia pathway
104416017
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
egr03032
]
104416017
03400 DNA repair and recombination proteins [BR:
egr03400
]
104416017
Enzymes [BR:
egr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
104416017
DNA replication proteins [BR:
egr03032
]
Eukaryotic type
DNA Topoisomerases
104416017
DNA repair and recombination proteins [BR:
egr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
104416017
FA (Fanconi anemia) pathway
104416017
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
Zn_ribbon_GRF
Zn_ribbon_Top1
zf-CCHC
Zn_ribbon_GRF_2
zf-CCHC_4
Motif
Other DBs
NCBI-GeneID:
104416017
NCBI-ProteinID:
XP_010025763
UniProt:
A0A059BA14
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Position
8:complement(72558442..72574472)
Genome browser
AA seq
915 aa
AA seq
DB search
MSGGGRAINVLNVAEKPSVAKSVATLLSRGQGMRVREGRSRYNKIFEFDYGIRGQRCRML
VTSVTGHLMELEFEDRFRKWHSCDPADLYAAPVRKSVPQDKLDIKRTLEEEARRCQWLVL
WLDCDREGENIAFEVIDTCTAANRNLTIKRARFSALIEREIHDSVQNLVEPNRWFADAVD
ARQEIDLRIGASFTRFQTMLLRDAFVIDSAADDRNLVLSYGPCQFPTLGFVVERFWEIQS
HEPEEFWIINCSHKSEEGIATFNWTRGHLFDYTCAVIIYEMCVEEPPATVAGVRQQEKYK
YPPHPLSTIELEKRASRYFRMSSEHTMKVAEELYQAGFISYPRTETDNFSARTDLHAIVQ
EQQGHPVWGSYAQRLLDPSSGLWRNPSNGGHDDKAHPPIHPTKFSGGERNWSQDHHRLYE
LVVRHFLACVSQPAVGAETTVEIDIAGEQFAASGRVIIAKNYLDVYRFESWGGSVIPTYV
PGQQFIPTTLTLDSGVTRPPPLLSEADLLNCMDKAGIGTDATMHDHIKKLLDRFYATKDQ
NMRFSPTNLGEALVMGYDDMGYKLWKPNLRSMMEFDMRAVSEGAKTKAEVLETCLQQMKA
CFLDARSNKQKLMEAMAVFFERAARTARDEQHVVGEFVRLCGLCHQSNMVLKRNRDGNFM
VGCLGFPQCRNVVWLPGSVSEAVVTANICNSCSPGPIYMIQFKFRRLEIPPYFSVDHLGC
IGGCDDTLQQLTEICGTGSRMSAARGGGPTPLSSSAQRSNSRQQACSNCRQLGHSSTDCP
SVISGTRNSRSRRAGQQDGGLSVSCDTCGASCPMRTANTANNKGRKFYSCQSEGCNFFAW
EDSLQNGGGRHGANGGASNSRARSNSLGGRGRGGRGGNNATNGTFVSATGDPITGRCYVC
GDPSHFANACPNRFT
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
atgtccggcggcgggcgggcgatcaacgtcctgaacgtggcggagaagccgtcggtggcg
aagtcggtggccaccctgctgtcgaggggccaggggatgcgggtccgggaggggcggtcg
cggtacaacaagatcttcgagttcgactacggcatccgggggcagcgctgccgcatgctg
gtcacctccgtcaccggccacctcatggagctcgagttcgaggatcgcttccgcaagtgg
cactcctgcgaccccgccgacctctacgccgcccccgtccgcaagtccgtccctcaggac
aagttggatatcaagaggacattggaagaggaagctagaaggtgccagtggctcgttcta
tggcttgattgcgatagggaaggtgaaaacatagcattcgaagttatcgacacatgcacc
gcagctaaccgtaatctgaccataaaaagggctcggttctctgctttgattgaaagggaa
atacatgactctgtgcagaatcttgtcgaacccaatcgatggtttgcagatgctgtggac
gcaaggcaagaaatagacctcaggataggtgcatcttttacaaggttccagactatgctg
ctaagagatgcattcgtcattgactctgctgcagatgaccggaacctagtcctaagttat
ggtccatgtcaattccctacacttggctttgtggtcgaacgattttgggagatacaatct
catgaacctgaggagttctggataatcaactgttctcacaaatctgaagagggcattgcc
acgttcaactggacgcgtggacatctctttgattacacttgtgcagttataatttatgaa
atgtgtgtcgaggagccacctgcaactgtcgcaggagttaggcaacaggagaaatacaag
tatcctccacatcctttgagtaccattgagctggaaaaacgtgcttctagatacttccgg
atgagctctgagcataccatgaaggttgcggaagagctttatcaagcaggatttataagt
tatcctcgtactgaaactgacaacttctctgccaggactgatttgcatgctatcgtgcaa
gagcaacaagggcatcctgtatggggatcatatgcccagcgtttattggaccccagttca
ggactctggagaaaccccagcaatggtggccatgatgataaggcccatccaccaattcat
ccaacaaaattttctggtggggagagaaattggagtcaggatcatcatagactctatgaa
ttggtcgttcgccatttcctggcatgtgtttcgcagccagccgtgggggcagaaaccact
gttgaaattgatattgctggtgagcagtttgctgcatcagggcgcgtgatcattgctaaa
aattacttggacgtctaccggtttgaatcgtggggaggttcagtgatcccaacttatgtg
cctggacagcagttcatccctacaactttaacactggattcaggagttaccaggcccccg
ccacttctaagtgaagctgacttactgaactgcatggacaaggctggcattggcaccgat
gccacgatgcatgatcacataaagaagctacttgatcggttctatgcaaccaaagaccag
aatatgcgcttctcaccaactaacctgggtgaggctctagtcatgggatacgatgacatg
gggtacaagctatggaagcctaacctcaggtcaatgatggaatttgacatgagggcagtt
agtgagggtgccaagacaaaagctgaagttctggaaacatgcttgcagcagatgaaagct
tgctttctagatgccaggtcaaataaacaaaaactgatggaagccatggctgtgtttttt
gagagggccgctcgaacagccagagatgagcagcatgtggtgggagaatttgttcggtta
tgtggactctgtcatcaatcaaatatggtgctcaagcgtaatcgagatggcaattttatg
gttggctgccttggttttccacagtgtaggaatgttgtatggcttcccgggtcagtatca
gaagcagttgtgacagccaacatttgcaattcttgcagtccaggtcctatctacatgatt
cagtttaagtttcggcggctggaaattcctccatacttcagtgtcgaccacctaggatgc
ataggtggatgtgacgacactcttcaacagttgacagaaatatgtggaacgggttctcgt
atgtcagcagcaagaggaggagggcccactcctttgtccagttctgcccaaaggagtaac
agtagacagcaggcttgcagcaactgccggcaattggggcattcttccaccgattgtccc
tcagtcatctctggcactcgaaattctcggtctcgcagagcaggccaacaagatggaggg
ttgtcagtttcttgtgatacttgcggagcatcatgtcctatgcgaactgctaacaccgca
aataacaaaggacggaaattttactcatgtcagtcagaaggatgcaatttcttcgcgtgg
gaggatagccttcaaaatggtggaggaagacatggtgcaaatggaggtgccagtaactca
agagctcgttccaatagtttgggtggccgtggaaggggtggacgaggtggtaacaacgcc
accaatgggacgttcgtttctgcgactggtgaccccattaccggaagatgttatgtttgt
ggagatccttcacattttgcaaatgcctgtccaaatcgatttacttaa
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