Eucalyptus grandis (rose gum): 104417315
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Entry
104417315 CDS
T03547
Name
(RefSeq) autophagy-related protein 16 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
104417315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
egr04131
]
104417315
03029 Mitochondrial biogenesis [BR:
egr03029
]
104417315
Membrane trafficking [BR:
egr04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
104417315
Others
Specific organelles associated proteins
Auto phagosome
104417315
Mitochondrial biogenesis [BR:
egr03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
104417315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40_CDC20-Fz
WD40
WD40_WDHD1_1st
EIF3I
Beta-prop_EML_2
WDR55
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
WDR90_beta-prop_4th
ATG16
Beta-prop_TEP1_C
ANAPC4_WD40
Beta-prop_SCAP
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_RIG_2nd
NBCH_WD40
Beta-prop_IFT140_1st
Beta-prop_VPS8
WDR54
Beta-prop_NWD2_C
Beta-prop_SPT8
Beta-prop_WDR19_1st
Beta-prop_EIPR1
Beta-prop_IFT122_1st
Beta-prop_DCAF4
Beta-prop_WDR35_TULP_N
Beta-prop_HPS5
WD40_RFWD3
eIF2A
Beta-prop_NUP159_NUP214
Ge1_WD40
Cytochrom_D1
Beta-prop_RIG_1st
Cep57_CLD_2
Beta-prop_Vps41
PEP5_VPS11_N
Beta-prop_RSE1_2nd
CENP-F_leu_zip
Fez1
Motif
Other DBs
NCBI-GeneID:
104417315
NCBI-ProteinID:
XP_010026919
LinkDB
All DBs
Position
2:complement(1249327..1252994)
Genome browser
AA seq
513 aa
AA seq
DB search
MSQEEAAVAAIRHALRALRKRHLVEEGAHGPAIAALSSPILSQSSEWKEKAETLELELQQ
YYKAQSRLSEQLVVEVAECRALKSLLQEKEAGMSSLQLELTDARNECSQLKAELEEKFKA
VELLISENQELKRQLEFMTAKAKNAEIENKMLVDRWMLQKMQDAERLNESTIQANALYED
MVDRLKASGLESFARQQVDGVVRRSEEGAEFFAESTVPSSCKHRIHAHEGGCASITFEYN
SGRLISGGQDRTIKMWDARTGSLSRTLYGCLGSVLDLTLTHDNRSVIAASSSNNLYVWDV
NSGRIHHTLTGHTDKVCAVDVSKFSSRHVVSAAYDRTIKIWDLQKGYCSNTIMFPSNCNA
LSFSMDGLTICSGHVDGNLRLWDIQTGKLLSEVAAHSLAITSISLSRNGNMVLTSGRDNL
HNLFDMRSLEVCGTLRATGNRVASNWSRSCISPDDSYVAAGSADGAVYIWSISKGDIVST
LKEHTAPVLCCSWSGLGKPLCSADKNGIICTWT
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcaggaggaagcggccgtcgcggcgataaggcatgccctgagggccctgcggaag
cggcatttggtcgaggagggcgcccatggccccgccatcgccgctctctcgagtccgatc
ctctctcagagttccgagtggaaagagaaggccgagactttggaactggagcttcagcaa
tattataaagctcaatcgcgactgtcagagcagcttgtggtggaggttgcagagtgtagg
gcattgaaatctctactgcaagagaaagaggctggaatgagttctctgcaactggagttg
actgacgcaaggaatgaatgctcacaattgaaggcagagttggaagagaaatttaaagct
gtagaattgcttataagtgagaaccaggagctcaagcggcaactggaattcatgactgca
aaagctaagaatgcagaaattgagaataagatgttagtagatcgatggatgttacaaaag
atgcaggatgctgaacgccttaatgagtcaactattcaggcaaatgcactttatgaagat
atggtagaccgcctaaaggctagtggtttagaaagttttgccaggcaacaagttgatggt
gtggtgcgccggagtgaagagggtgctgaattctttgctgaatcgactgttccttcttca
tgtaagcataggattcatgcccatgaaggcgggtgtgcttctataacatttgagtataac
tctggtaggttgattagtggtggacaggacaggacaataaaaatgtgggatgcaagaact
ggatcgttgagtcgcacactttacggttgccttggttcagttctcgatcttactcttacg
catgataacagatctgtcattgcagccagcagctcaaataatttgtatgtatgggatgtc
aactcaggacgtatccatcataccttaaccggccacaccgataaagtttgcgcagtagat
gtaagcaagttttccagccgtcatgtagtgagcgcagcttatgaccgtaccatcaaaatt
tgggatttgcagaaaggttactgcagtaacacaatcatgtttcccagcaactgcaatgca
cttagcttcagcatggatggccttactatatgttctggtcatgtagatggcaaccttcgt
ttgtgggatattcaaacagggaagttgctgagtgaagttgccgcacattcgcttgctatc
acgtccatctctctttcgcgaaatggaaatatggttttaaccagtggaagagacaatttg
cataatctatttgatatgaggtcacttgaagtttgcgggacattgagagctactgggaat
agagttgcctctaactggagtaggtcctgtatcagcccagacgacagctatgtagctgct
gggtctgctgatggagctgtttatatatggtctatatcaaaaggtgatattgtgagcaca
ctgaaggagcatactgctcccgtactctgttgttcgtggagtggtcttgggaaaccattg
tgctcggcagataaaaatggaattatttgtacatggacatag
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integrated database retrieval system
