Eucalyptus grandis (rose gum): 104417768
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Entry
104417768 CDS
T03547
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104417768
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
egr03041
]
104417768
03009 Ribosome biogenesis [BR:
egr03009
]
104417768
Enzymes [BR:
egr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104417768
Spliceosome [BR:
egr03041
]
Complex A
U1 snRNP components
U1 related factors
104417768
Complex B
104417768
Ribosome biogenesis [BR:
egr03009
]
Eukaryotic type
Pre-60S particles
Helicases
104417768
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
104417768
NCBI-ProteinID:
XP_010027294
UniProt:
A0A059CY57
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Position
2:2108706..2112638
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AA seq
624 aa
AA seq
DB search
MNPVDPRYSDPTSFRNRRSDFVPPRAPPVYAAPSYGGGGGGQGPYEGPPPGMGASVYPPF
QSPTGGFEIGRGGGMADGHMGGHRGRPGQGGGGRGGRGGGGGGGYGGHGGNRGFGDGRSG
GGRGGRQGGWSSQRDHEKFDFPKPNFDQLVPFEKNLYVESPMVAAMSEHEVRTYRARRDI
TVEGNDVPKPVRTFQEASFPGYCLDVIVKLGFVEPTPIQSQGWPMALKGRDLIGIAETGS
GKTLAYLLPALVHVSSQPPLVRGDGPIVLVLAPTRELAVQIQQEALKFGSIGSRAKISIR
STCVYGGAPKGPQISDLNKGVEIVIATPGRLLDMLGAYKTNLRRVTYLVLDEADRMLDMG
FEPQIRKILTQIRPDRQTLLWSATWPREVEALARQFLSNPYKVIIGSTDLKANQSISQIV
EVIKESEKYSRLIKLLKAVMDGSRILIFVETKKGCDQVTKQLRMDGWPALSIHGDKSQSE
REWVLAEFKSGRSLIMTATDVAARGLDVKDIKCVINYDFPMTLEDYVHRIGRTGRAGAKG
TAFTFFTDSNSRFAGELLKILQDAGQVVPPALSDLARSASFYGAGSGNSVRSRGHRGFGN
RGRISGSNTVPLGGGRPLGGGRRW
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgaacccggtcgacccgagatactcggacccgacttccttccgcaaccgcagaagcgat
ttcgtgcctccgagggcaccgccggtctatgcagccccgagctacggcggcggcggcggc
ggacaggggccgtatgaaggtccgccgccaggcatgggggcctccgtgtacccgcccttc
cagtctccgaccggagggttcgagatcggtcgcggcggagggatggctgacgggcatatg
ggcggccacagaggtcgaccgggccaaggaggaggtggaaggggtggccgaggaggaggc
ggcggcgggggctatggaggacacggtgggaataggggttttggcgatggccgttccggt
ggtgggagaggcggaaggcagggcggctggtcgtcgcagagggaccatgagaagttcgat
ttcccgaaacccaattttgaccagctggtgccgtttgagaagaatttgtacgtggagagt
cctatggtggctgcaatgtctgagcatgaggtcaggacgtatcgtgcgagaagggatatt
actgtcgaggggaatgatgttcccaagcctgttcggactttccaagaggctagctttcct
ggatactgccttgatgtgattgtgaagttggggtttgtcgagccaacgcccatccaatct
cagggatggccaatggctttaaagggtagagatttaattggtattgccgagacaggttct
ggcaagactctggcttatctgctaccggctttggtgcatgtcagttcacagccaccctta
gttagaggggacggtcctattgtgctggtgcttgcacctactagagagttggcggtgcag
attcaacaggaagctttgaaatttggctcgattggatcaagagcaaagatcagtatcaga
agtacatgcgtttatggcggtgcccctaagggaccacaaattagtgatcttaataagggt
gttgagatcgtcattgctacgcctggtcgtctcttagatatgttgggagcatataagaca
aacttacggcgagtgacttatctcgtgttggatgaagcggatcgaatgctagacatggga
tttgaacctcagataaggaagattttaactcaaatacgaccagataggcagacactattg
tggagtgcaacatggccgagagaggttgaagctctggcaagacagtttttgagcaatcca
tataaggttatcatcggatccactgatctgaaagcaaaccaatctataagtcaaattgtt
gaagtaataaaagagagtgaaaagtacagcaggctgattaaactactgaaagcagtgatg
gatgggagtcgaattctgatatttgtagaaacaaaaaagggatgcgatcaagtgacaaaa
cagctgaggatggatggatggccagctctatctatacatggagacaaaagccagtctgag
agggaatgggtgttggctgaatttaagagtggcagaagtctcataatgactgccactgat
gttgctgcaaggggtcttgatgtcaaggatataaaatgtgtgataaactatgatttcccg
atgacacttgaggattatgtgcatagaattggtcgaactgggcgagctggtgcaaagggc
actgcctttaccttcttcactgattctaattcgaggtttgctggggaacttctaaaaatc
ttgcaagatgcggggcaggttgtccctccagctttatctgacttggctcgttcagcatcc
ttttatggagctggttcaggcaacagtgttcgctcaagaggacatagagggtttggaaac
aggggccgtatctctggatctaatacagttcctcttggtggtggaaggcctcttggtggt
ggaaggaggtggtaa
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