Eucalyptus grandis (rose gum): 104418939
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Entry
104418939 CDS
T03547
Name
(RefSeq) E3 ubiquitin-protein ligase UPL3 isoform X1
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
104418939
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
egr04121
]
104418939
Enzymes [BR:
egr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
104418939
Ubiquitin system [BR:
egr04121
]
Ubiquitin ligases (E3)
HECT type E3
104418939
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HECT
TPR_TRIP12_N
ARM_ARMC5
Arm
HEAT_EZ
TFIIA
Calsarcin
PSP
Baculo_Ac102
Ltn1_1st
Motif
Other DBs
NCBI-GeneID:
104418939
NCBI-ProteinID:
XP_039167349
LinkDB
All DBs
Position
4:34016462..34027383
Genome browser
AA seq
1812 aa
AA seq
DB search
MESTESSGSRRDRRRNNTDNSDKGKEKEHEVRVRERDAERALGLNMDRDGGVEDDDNDSE
GGVGILHQNLTSASSALQGLLRKLGAGLDDLLPSSAIASASSSHQTGRLKKILTGLRADG
EEGRQVEALTQLCEMLSIGTEDSLSTFSVDSFVPVLVGLLNHESNPDIMLLAARALTHLC
DVLPSSCAAVVHYGAVSCFCARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVL
SYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLT
RIAEAFASSPDKLDDLCNHGLVTQAASLISTNNSGGAQASLSTPTYTGVIRLLSTCSSGS
HLGAKTLLLLGISGILRDILSGSGVSANGSVPPALTRPPEQIFEIVNLANELLPPLPLGT
ITLPVSSYLFVKGPMLRKSPTSNSGKQEESNGNAVEVSTREKLLNEQPELLRQFGMDLLP
VLIQIYGSSVNGPVRHKCLSVIAKLMYFSTSEMIQSLLSVTNISSFLAGILAWKDPHVLV
PALQIAEILMEKLPETFSKMFVREGVVHAVDQLILAGNSSSGSASADKDNDSVTGTSSRS
RRYRRRSGSSNPEGTSVEESKNSLSINVGSPPGSIEIPNVNSNLRTTVSACAKAFKDKYF
PSDPGATDVGVTDDLLHLKNLCMKLNAGIDDQKMKAKGKSKNSGSRLPDNSANKDEYLNG
IISEMLAELSKGDGVSTFEFIGSGVVGALLNYFSCGYYSKDRITEANLSRLRQQALRRYK
SFVSVALPYGNGEVAVAPMTVLVQKLQNALSSLERFPVVLSHSARSSSGSGRISSGLSAL
SQPFKLRLCRAQGEKSLRDYSSNVVLIDPLASLAAVEEFLWPRVQRSDSGQKPSPSGGNS
ESGATPAGAGASSPSSSTPATRRHSTRSRSSVNIGDTAKKEMAQEKSSSSSKGKGKAVLK
PTQEEGRGPQTRNAARRRAALDKDAQMKPENGDSSSEDEDLDISPVDIDDALVIEDDDIS
DDDDDDHEDVLRDDSLPVCLTDKVHDVKLGDSAEDSATNPATSDSQTNPPSGSSSRAAVS
RPSDSADFRGGNTFGARGAMSFAAAAMAGLGSANGRGFRGGRDRHGRPFPSNSEPPKLIF
TAGGKQLNRHLTIYQAIQRQLVLDEDDDERFAGSDFASGDGSRLWSDIYTITYQKPDGQG
DRASGGAAPSKSAKSGSSSSYSDVQSQRMSLLDSILQGELPCDLEKSNPTYNILALLRVL
EGLNQLASRLRAEIVRNDFAEGRTSSLDRLSTSGAKVSLEEFMNSKLTPKLSRQIQDALA
LCSGSLPPWCSQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGAEGHGSANERE
VRVGRLQRQKVRVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSH
DLQKVGLEMWRSTSSEKRAVGVDLNEQSNGKSTSTDSAVEDRDTVVAPLGLFPRPWPPNA
DVSDGSKFSKVIEYFRLVGRVMAKALQDGRLLDLPMSSAFYKLVLGQELDLHDIISFDAE
VGKVLEELHALVCRKQFLESSSDHNRGAIADLHFRGARIEDLCFDFTLPGYPDYVLKSGD
ETVDINNLEEYLSLVVDATVKTGIARQMEAFRAGFNQVFDISSLQIFTPHELDYLLCGRR
EMWEAETLAEHIKFDHGYTAKSPAILYLLEIMGEFTPEQQRAFCQFVTGAPRLPPGGLAV
LNPKLTIVRKHSSTASTVPTNGTGPSESADDDLPSVMTCANYLKLPPYSSKEIMYKKLLY
AINEGQGSFDLS
NT seq
5439 nt
NT seq
+upstream
nt +downstream
nt
atggagtccaccgagtcttcggggtcccgccgcgaccgcaggaggaacaatacggataat
tccgacaagggtaaggagaaagagcacgaggtcagggttcgggagagggatgcggagaga
gccctggggctgaatatggaccgcgacggtggggttgaggatgacgataacgacagcgag
ggcggagtgggcattttgcaccagaacctgacttcagccagtagtgcccttcaagggctt
ttgaggaaattgggtgctggattggatgacctgcttccgtcctcggcaattgcgtccgca
tcttcgtcgcaccagaccggtcggctcaagaagattttaactgggttgcgtgcggatggt
gaggaagggaggcaggtggaggcattgacacagctgtgtgagatgctgtcgattgggacc
gaggactcgctcagcactttctctgtggattcctttgttccagtacttgtcgggttgctt
aatcacgagagtaatccggacataatgctccttgctgcgagagctcttacgcatttatgt
gacgtgctgccctcatcctgcgcagctgttgtgcattatggtgctgtttcatgcttttgt
gccaggctgcttactatagagtacatggacctggctgagcagtctctccaagctcttaag
aagatctcccaagagcaccctactgcctgcttacgagccggtgctctcatggcggtgctt
tcatatctggattttttctccacgggagtgcagcgagtggcactgtctactgctgccaac
atgtgtaagaaactcccatctgatgcggccgattttgtgatggaagctgttccgttattg
acaaaccttcttcaataccacgatgccaaggtgctagagcatgcttctgtatgcttgact
cggattgctgaagcattcgcctcatctccagataagctagacgatctgtgcaaccacgga
ctagtgacacaagctgcgtcccttatctcgactaataattccggtggtgcccaggcatct
ctcagcacgccaacgtacacgggagtgatccggctgctttcaacctgttcaagtggctcc
catttaggagctaaaacattgcttctcctaggaataagtggcatccttagagatattctg
tcaggatctggtgtgtctgccaatgggtctgttccacctgcgttgacaagaccacctgag
cagatttttgagattgtgaacctagccaatgagcttcttccaccactgcctctaggaaca
attacccttcctgttagttcgtacttatttgtcaaagggccaatgctgagaaagtcccct
accagcaattcagggaagcaagaagaatctaatggtaatgccgtggaggtttcaactcga
gagaaattattgaatgagcagcctgagctgttgaggcaatttgggatggatctgcttcct
gtcttgatacagatttatggttctagcgtgaatggtcctgttcgtcacaaatgtctctct
gtcatagcgaagttgatgtacttcagtacttctgagatgatccaatcacttttaagtgtg
accaacatatcaagttttctagctggtatacttgcatggaaagatccgcatgtcttggtt
cctgcattacagattgcagaaattcttatggagaagcttccggagactttctccaagatg
tttgtcagggaaggcgttgttcatgcagtagatcaattgatcttggcaggtaattcaagt
tccggttctgcttctgctgacaaggataatgactctgttaccggaacatcatcacgctct
aggcgatatagacgccgaagtggtagctcaaaccctgaggggacttcggtagaggaatct
aaaaattcactttccataaatgttggttcacctccaggttctatagaaattccgaatgtc
aattccaaccttcgcacgacagttagtgcatgtgcaaaagcatttaaagacaaatacttc
ccttcggatcctggagcaaccgatgttggagttacagatgatctcttgcacttgaaaaat
ctttgtatgaaactaaatgctggcattgacgatcagaagatgaaagccaagggaaaatca
aaaaattctggatctagattacctgataattctgctaacaaggacgaatacttgaatggg
atcatatctgagatgctggcagagctaagcaaaggagatggtgtgtctacttttgagttt
atagggagtggtgtagttggagctttgcttaattacttctcctgtggctattattcgaag
gacagaattacagaagctaatctttccagacttcgccagcaagctttaaggagatataag
tcatttgtgtcagttgctcttccatatggtaatggtgaggtggctgtagctcctatgact
gttttagttcagaagcttcaaaatgctttgtcatctttagaacgctttccagtggtccta
agtcattcagcaaggtcatctagtggaagtggtcgcatctcttctgggctcagtgcatta
tctcagccattcaagctgcgcctttgccgtgcccagggagaaaaatctcttagagattat
tcttcaaatgtggtgctcatcgatcccttagcaagtttggcagctgttgaagaatttctc
tggcctcgagttcagcgaagtgattctggtcagaagccctcaccatctggaggtaactcg
gagtcaggggcaactcctgctggtgctggggcttcatctccttcctcttctacacctgcc
actcgtcgtcattcaactagatctagatcatctgtcaacataggggacacagccaaaaaa
gagatggctcaagaaaaaagctcgagttcatcaaaggggaaaggtaaagctgttctgaag
cccactcaggaggagggaagaggaccacaaacaagaaatgctgctcgcaggagggctgct
ttggataaagatgctcagatgaaacctgaaaatggggattctagctctgaggatgaggat
ttggacatatcccctgttgatattgacgatgcattggttattgaagatgacgatatatct
gacgatgacgatgacgaccatgaagatgttctaagagatgattctcttcctgtttgcttg
actgacaaagtacacgatgtcaaattgggcgattctgctgaggatagtgctacaaaccca
gctacaagtgacagccagactaacccaccttctggttctagcagtagagcagctgtttct
cggccatctgattctgctgattttaggggtggtaatacctttggtgctagaggagcaatg
tctttcgcagctgctgccatggctgggcttggatctgctaatggtagaggttttagggga
ggcagagatcgtcatggacgtcctttcccgagtaacagtgaacctccaaaattgatcttc
acagcgggagggaagcagcttaataggcatttgaccatttatcaggccatccaacgacag
ctcgtgttggatgaggatgatgatgaaaggtttgctggcagtgattttgcatctggtgat
ggaagcaggttgtggagtgatatatacaccattacctaccagaaaccagatgggcagggt
gacagggcatctggtggtgctgctccgtcgaagtctgcaaaatctggttcttcctcctcc
tattccgatgtccaatcacagcgcatgtcccttttggacagcatattgcaaggggagctt
ccttgtgatctagaaaagtctaatccaacatacaatattctggcacttttacgggtattg
gagggattgaatcaattagcatctcgtttgagggctgagatagttcgcaatgacttcgct
gaaggaagaacatctagtctagatcgacttagtacatctggtgccaaagtttctcttgaa
gaatttatgaattccaaacttacgccgaaattgtcccggcaaatacaagacgctcttgca
ttgtgtagtgggagtcttccaccatggtgttcccagttgacaaaagcatgcccgttcttg
tttccttttgagacgcgtaggcagtacttctattcaactgcttttggattatcccgggca
ttatatcgtctccaacagcaacaaggtgctgaggggcatggatcagcaaatgagcgagag
gtaagagttgggagattacagcgccagaaggttcgtgtatctcgaaaccgcatcttggat
tctgctgcgaaagtaatggagatgtattctagccagaaagctgtgcttgaagttgagtat
tttggtgaagttggaacgggtttgggtccaaccctggagttctacactctcttaagtcat
gacctgcaaaaagttgggttggagatgtggaggtcaacttcatcagagaagcgtgcagtg
ggtgttgatctgaatgaacagagcaatggtaaaagcaccagtacggattctgctgtggaa
gatagagatacagttgtggctcctcttgggttgttccctcgcccttggcctccaaatgct
gatgtttccgatggcagtaagttctccaaggtcattgagtatttccggttggtgggtcgt
gtaatggctaaagctcttcaagatggacggcttttggacctgccaatgtcttcagcgttc
tataagcttgtgcttggacaagagcttgatttgcatgatatcatctcttttgatgcggag
gttgggaaggtattggaagagttgcatgctcttgtttgccgtaaacagtttctggaatca
agcagtgaccacaatcgtggtgcaattgctgatttacattttcgtggggcccgaattgaa
gatctctgtttcgattttacacttcctggttatccggactatgtcctgaagtcaggggat
gaaactgttgacataaataacctggaggaatacttatccttggtggttgatgcgactgtc
aaaacgggaattgctcgacagatggaggcatttagagcagggttcaatcaggtttttgac
atctcatctctacaaatatttactccacatgaactggactatctgctctgtggccgtaga
gagatgtgggaggcggagacacttgcggagcacataaaatttgatcatggctacactgct
aagagcccagcaattttatatttacttgagataatgggagagttcacgcctgagcagcag
cgggccttctgccagtttgttaccggggctccaagacttccaccaggtggtctggctgta
ctgaatccaaagctgacaattgtgcggaagcattcttctacagccagtactgtaccaact
aatggaactggtccttcagagtcggcagatgacgacttgccaagcgtgatgacttgtgct
aattacttaaaacttcccccatattcttcaaaggagattatgtacaagaaattgctttac
gctatcaatgaagggcaaggatcttttgatttatcgtga
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integrated database retrieval system
