Eucalyptus grandis (rose gum): 104419229
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Entry
104419229 CDS
T03547
Name
(RefSeq) protein RST1
KO
K27498
focadhesin
Organism
egr
Eucalyptus grandis (rose gum)
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egr03019
]
104419229
Messenger RNA biogenesis [BR:
egr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
104419229
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3730
Motif
Other DBs
NCBI-GeneID:
104419229
NCBI-ProteinID:
XP_010029136
UniProt:
A0A059ARE9
LinkDB
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Position
9:30031118..30046525
Genome browser
AA seq
1852 aa
AA seq
DB search
MESYAPLLEKLRLPQPSLQRRAVISIFSKLRSAPSRLDADSDPGREAVARCLLSASSAVV
DQAVRELCRLVADSKMDLPRGLLELQSALEGSEPRFVGLLVKGIGVLVRLGFQRSGGSWR
FASTEAHPFVKVLLYRAEARDELVRQVLLFVAQNKQIGMEEVCEFLRPLLYYSILRVPFS
ESSSGMFARQLLTSMASLCCSLPDDAIPMLKLLIRCMKYFPHKSADDFGSLMDCAGQIVD
AFIVVLRHFVAAQMLVSEIQLCGVELLETVLQSSIHPLKHSTWSEPVIELTKRLLLIQKD
LGLRYTCELMSISLSLFMGLVQSELEHEQVSILKVILHLLKWKTDSGYVVGNSGCAFCEE
LLFIFPAVSLMSSPSKSVKEAAGELIVILQKIIEKPLIVLENDIPIKEQIQSVSIPGKIM
FRLLQQLWLQDLSTSSRFFIETFAFSGTIESEGVSHVGRPWASKLIELSLMITDRKKCSL
PVTQAQEIFITEMPMIICTVASVLVTHQLLGPAAVDVLTAMGLADPKLGVPLLLGVLFFT
NIFARKDVGRGDMLLKVLGMLPSLASNSSMIPLVVQTILPLLHNDANPVLYSAATRLLCQ
TWTANDRAFGSLQGILLPKSFAEFGHEKVVCLSMATSIRDVCRKNPDRGVDLILSVSSCI
EMQDPLIQALGFQSLAHLCEADVVDFYTAWDVIEKHMLDYSKDPNLAHSICLLLRWGAMD
AQAYPEASGHVLQILWDIASSTHGNGIKWLKARASAFDALSQYEIPDIEKCISELRERST
SLLFLETNDEILGSMERFQVKIITYEHMNRRRFVKEKKAVTNKIEKLLDVLPQVIFSSGG
RSARECPGAALLCLSFTPKNSKSHRAYADAHAMYENMLVEIAASLQLSRNTFVALLSLQS
WKSFMRRWIRANMLSLDAKVSSVALDRPSKAAHDILKSMMRIAEESIPRSAENIALALGA
LCAVLPQSAHTAISAVSKFLLNWLFQFEHEHRQWSAAISLGVISSCLHVTDHKLKFQNIS
GLIEVLSSSKSTFVKGACGVGLGFSCQDLLTRTEAADNADRDSYKMAEVELVGNIIRSLS
ITILELTKSTSQILQSLCECFPNDMCENGRYQNPDFLNEDSDLVEEDTWGLAGLVLGLGS
SISAVYRSGEIDVTLKIKDLITSWIPHTEPFVWSSNSCNEGSEMLLSVGSCLALPMVVAF
CQRVELMDVGELNRLINSYRELISELLSVKKSGAFHQSLLMASCAGAGSLLACVVKEGID
SIEVGCLKELLELLRRCYSNPQPPSTYLGGMLGIVNSLGAEAGLVLIHPLSSNYGRYRLK
ESSHIMHALLSSPVCEPLLTSSMQEMFLVAQHSEDNQLQQYSAWALSFLRHGLWSKEVNL
DDHIQTDTTVSEVASQSFSNDSIVVKLCSWLTNVNSSKMNRPNTETGNTPDVRTIRTVLK
CLSRAPRLPNFDWKAIVRRSMRYEAEIGSSLPSDLAPQKGILRLECLNFSLAHASHFDQL
LEFLDELSDLSRFRTLEPNLQCCLLFHLADLVKVFSSSRREKLLSDIADFLLLLTSNQVY
SLDQKLLLRISCWKGLHQCLDEALLDSEEYLLGIKRCMVVLFSLLPLYHPTSIAEADRMN
FTEEWSEAVRCFEKAPRDWLLNFLQVDLDKENEQFLDVLKKIEVKVRLVRSSSIPLSELG
RLKAFLFNCNANDTWNVLVEVVATLQRAEGSIKRQWLVDAVEISCVSNFPSTPMQFIGLL
SGSCCKYMPLLILDRFSVLSDLPVTLSTLLTDPSWTVIAEHFTVTLLASTERLYHWVTQP
SCGEGTHTLQGINKSENSLAPSLLQVMHDACTSLRNYLPLEKQITLANMAIH
NT seq
5559 nt
NT seq
+upstream
nt +downstream
nt
atggagtcgtacgctccgcttctcgagaagctccggctcccgcagccttccctccagagg
cgcgccgtcatctccatcttctcgaagctccggtccgccccgagccgcctcgacgccgac
tccgatccggggcgcgaggccgtcgcccgatgcctcctgtccgcttcctccgcggtcgtc
gaccaggccgtgcgcgagctgtgccgcctcgtcgccgactcgaagatggacctcccccgc
gggctgctggagctccagtccgccctcgaaggatcggagccgaggttcgtcggtctcctc
gtgaaagggattggggtcctggtccgattgggattccagaggagcggcggctcgtggcgg
ttcgcgtcgacggaggctcatcctttcgttaaggttcttttgtaccgagctgaggcccga
gatgaactcgtgcgacaggttttgttgtttgtggcgcagaacaagcaaattggcatggag
gaagtgtgcgaattcttgagaccgcttctgtactattcaattttgagagtgccattttcg
gagtcctcgtcgggtatgttcgcaaggcaactgttgacatcaatggcatcgctttgttgc
tcattgcctgatgatgcaatccctatgctcaagcttttgattcgatgtatgaagtatttc
ccacacaagagtgctgatgatttcgggagcttaatggattgtgctgggcagatagtggat
gcatttatagttgttttgagacattttgttgcggcacaaatgcttgtttccgaaattcaa
ctttgtggagtggagctattggagactgttcttcagtcaagcattcatcctctcaagcac
tctacatggagtgagcctgttatcgaattgacaaagcgcttattgcttattcagaaagat
cttggtctgagatacacgtgtgaactaatgtcaatcagtttgtcattgtttatgggtcta
gttcaatcagaactcgaacacgaacaagtttcaatactgaaggtcatcctccatcttttg
aagtggaaaactgattcaggatacgtggttggtaactctggatgtgctttctgtgaagag
ctcttattcatatttcctgctgttagtctcatgtcatcaccttctaaatctgtcaaagaa
gcagcaggtgaattgattgtcatattgcaaaaaattatagagaaaccactgatagtactg
gagaatgacattcctattaaagagcaaattcaatcagtcagcatacctggaaaaataatg
tttaggctcttgcagcaattatggttacaggatctatccacatcatctagattctttatt
gagacttttgctttctccgggacaattgaatctgaaggagtatctcatgttggaagacct
tgggcatctaaattgatagaactctctttaatgatcactgacaggaaaaaatgctctcta
cctgtgacacaagctcaagaaatattcatcactgaaatgccaatgataatctgcacggtg
gcaagtgttttggtgacacatcagttacttgggcctgctgcagtagatgttttgactgct
atgggtctcgcggaccctaaactaggagttcctttgttgctaggcgttcttttcttcact
aatatatttgccagaaaagatgttggacgcggtgatatgctgttaaaagttttggggatg
cttccatcacttgcttcaaattcctcgatgattcctcttgttgttcagactatcttgccc
ttgcttcacaatgacgcaaatccggttttgtattcggcagcaacccgtttgctttgccag
acctggacagctaatgaccgtgcttttggaagtttgcaagggatacttcttccgaaaagc
tttgccgagtttggacatgaaaaagttgtctgtttaagtatggccacttccattcgagat
gtttgcagaaaaaatcctgataggggtgtggaccttatcctgtctgtttcgtcgtgcatc
gaaatgcaagatcctctcattcaggcgcttggttttcaaagtcttgcccacctttgtgaa
gctgatgtagtcgatttctacacggcatgggatgtcattgaaaagcacatgctagattac
tccaaagacccaaacctagcacacagcatatgccttctcctaagatggggtgcaatggac
gcccaagcttaccctgaagcttcagggcatgtcttgcaaattttgtgggacatagccagc
tcaacacatggcaatggaattaaatggttgaaggctagggcctctgcttttgatgcctta
agccagtatgagataccagatattgaaaaatgcatttcagagttaagggaaagaagcaca
tctttgctttttttggaaacaaatgatgaaatacttggctctatggaacggtttcaagtc
aagattatcacatatgaacatatgaatcgtcggagatttgtaaaggagaaaaaggctgtc
acaaataagattgaaaagctgctggatgtacttcctcaggttatattctcttcaggagga
agaagtgctagagaatgtcctggtgcagcgctgctgtgcctttcatttactccaaaaaat
tcaaagagtcacagagcttatgctgatgcacatgctatgtatgagaacatgttggtggag
attgccgcatctcttcaactctcaagaaatactttcgttgcacttctttcgttgcaatcg
tggaaatccttcatgcgacggtggattagggcgaatatgttgtctcttgatgcaaaagta
tcgtctgtagctttagatagaccatctaaagctgctcatgatattttgaagagcatgatg
agaattgctgaggagtctattcctagatctgctgagaatattgcgctggcccttggtgca
ctctgtgcggtgttgcctcagtctgctcatacggctatatcagctgtgtcgaagtttctt
ttgaattggttgttccagtttgaacatgaacatcggcagtggtctgctgcaatttctctt
ggagtgatctcaagctgtctacatgtcacagatcataaactaaagtttcagaacatctca
ggacttattgaggttttgtctagtagcaaaagcacctttgtgaaaggagcctgtggagtt
ggcttgggtttttcatgccaggatcttctaactaggactgaagctgctgataatgctgac
agagattcctacaagatggctgaagttgaattagtagggaatattatcaggtcattatct
atcacgatcttggaacttacaaaatcaacatcccagattcttcaaagtttgtgtgaatgt
ttccccaatgacatgtgtgagaatggtagatatcagaatcctgatttcttgaatgaggac
agtgatcttgtggaggaagacacctggggtcttgctggacttgttcttggtttgggcagc
tctattagtgcagtttaccgaagtggggaaattgatgtgacactgaagataaaggacttg
ataacttcatggattccacacacggagccatttgtttggagctctaactcctgcaatgaa
ggatctgagatgcttctatctgttggatcttgtcttgcacttcccatggttgtggctttc
tgccagagagtagaattgatggatgttggtgaactaaaccgactgataaatagttataga
gaacttatatctgaattattgtctgttaaaaagtcaggtgcattccaccagagcttgttg
atggcatcatgtgctggagcagggagtctccttgcctgtgttgtgaaggaaggcatagat
tccattgaagttggatgtctgaaagagttactggaattgttgaggagatgttattccaat
cctcagcctccctccacttatctgggagggatgcttggaattgttaattctttgggtgca
gaagctgggttggttctgattcatcccttatcctccaattacggtcgttacaggctgaag
gaatcttctcatataatgcatgcgcttctttcaagtcctgtctgtgagcctttgttaaca
tcatcaatgcaagagatgtttcttgttgctcaacattctgaagataatcagctgcaacaa
tactctgcctgggcactttcttttcttcgacatggtctgtggtccaaggaagtaaatttg
gatgatcatattcagactgataccactgtctcagaagttgcttctcaaagtttctccaat
gacagtatagtcgtgaaactctgctcatggttaacgaatgtgaattcatcaaagatgaat
agaccaaacacagagacagggaacacaccagatgtgagaacaattagaactgtgctgaag
tgcctttcgcgagctccaagattaccgaattttgactggaaagcaattgttaggcggtcc
atgagatacgaagcagaaattggcagctccttgccatctgatttggctcctcagaaagga
atcttgaggctggaatgcttaaatttttcgttagctcatgcatcccattttgatcaactg
ctggaatttcttgatgagctctctgacctctcaaggttcaggacacttgaaccaaatcta
cagtgttgtctgctctttcatctggctgatcttgtgaaagttttctcttcgtccaggcgt
gagaaattactctctgatatagctgatttcttgcttttacttacctcaaaccaagtttac
agccttgatcagaaacttttgttacgtatttcttgctggaagggcctccatcaatgttta
gacgaagctttacttgattctgaagagtatcttttaggtatcaaaaggtgcatggtggtg
ctcttctctttgttgcctttatatcatcctacaagtatcgctgaggcagatcgcatgaat
tttactgaagaatggtctgaagcagttagatgctttgagaaggcaccaagggattggctt
ttgaattttctacaggtggatttggataaagaaaatgagcagttccttgatgtcctaaag
aaaattgaggtgaaagtgaggttagtcaggagcagttccatcccattgtctgagctggga
agactgaaggcctttttatttaactgcaatgcaaatgacacatggaatgtgcttgttgaa
gttgtagcaactttacaacgtgctgaaggaagcattaaaagacagtggcttgttgatgca
gtggagattagctgtgtctctaattttccttctacgccaatgcaatttattggcctgctc
tcaggcagttgctgcaaatacatgcctttgttgatcctggatcgcttcagtgtcttgagt
gatcttccggttactctctctactcttttgaccgacccctcttggacagtcattgcggaa
catttcactgtgactcttttggcatcgactgagcgcctttaccattgggttacacagcca
tcctgtggtgagggtacgcatacattgcaaggtatcaataaaagcgagaacagcttagct
ccgtccctactacaagtgatgcatgatgcttgtacatccttaagaaactacttgccttta
gagaagcagatcacgcttgccaacatggcaatccattga
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