Eucalyptus grandis (rose gum): 104419243
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Entry
104419243 CDS
T03547
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 14 isoform X2
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104419243
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
egr03041
]
104419243
03009 Ribosome biogenesis [BR:
egr03009
]
104419243
Enzymes [BR:
egr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104419243
Spliceosome [BR:
egr03041
]
Complex A
U1 snRNP components
U1 related factors
104419243
Complex B
104419243
Ribosome biogenesis [BR:
egr03009
]
Eukaryotic type
Pre-60S particles
Helicases
104419243
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
104419243
NCBI-ProteinID:
XP_010029150
LinkDB
All DBs
Position
9:complement(31118752..31124339)
Genome browser
AA seq
707 aa
AA seq
DB search
MAATATLSSSGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPTGTSSSAHI
SSSVQVRQPSPGQQRGYNPDKEDDRYGRGNNGGSRGIQSAVGGTVSSQNAPKGTVGFGHG
APSVKEQGHLSTGSSLSADAYRRLHEITVSGADVPPALASFEATGFPPEILREVHSAGFS
APTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLIPGFIHIKRCRNNSRMGPTVLVLSPT
RELATQIQDEAVKFGKSSRISCVCLYGGAPKGPQLRDIDRGADVVVATPGRLNDILEMKR
ISLQQVSYLVLDEADRMLDMGFEPQIRKIVREVPARRQTLMYTATWPKEVRKIAADLLVN
PVQVNIGNVDELVANKSITQHVEVLAPMEKHRRLEQILRSQEPGSKIIIFCSTKKMCDQL
ARNLNRQFGAAAIHGDKSQSERDFVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDF
PTGVEDYVHRIGRTGRAGASGLAHTFFSDQDAKYAAELIKVLEGANQRVPPEIRNMASRG
GGMGRFNRRWSSDSGGRDGGRGGRGDSGYGGRDAGRGGWSFSASASNKGGGRGYGSESRD
RLSSGGQDGYERARSRSPRGSVRSFHQAMMERSQSHRPGASSFHSEKTRESSRSPRRAKS
PSPRGKDNERGNFGGAHGDAPSKWDGGYGGGSRSSYLGEEEEGMIPV
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atggctgcaactgcgaccttgtcgtcctctggtcctcgctacgctccagaagaccctact
ctacccaagccctggagagggctcgtcgatggtaaaacgggttatctctacttttggaat
ccggagactaacgttactcagtacgagaggcccacgggcacgtcgtcttcagctcatatc
agctcttctgttcaagttcgacagccatcgcctggtcagcagcgaggttataatcctgat
aaggaagatgatagatatggccgaggaaacaatggcgggtcaaggggcattcagagtgca
gttggtgggacagttagttcacaaaatgctccaaaggggacagttggttttgggcatgga
gcaccttctgtgaaagaacagggtcatttaagcactggaagtagtttatctgctgatgct
tatcggcgtcttcatgaaattactgtttctggagctgatgtgccaccagcgttggcatca
tttgaagctacaggattccctccagagattctcagggaagtacacagtgctgggttttct
gctccaaccccaattcaggcacagtcatggcctattgcactccaaagtcgagatattgtg
gccattgctaaaactggttctgggaagacattgggatatcttataccaggctttatccat
atcaagcgctgccgtaataattctcgtatgggtccaactgtgctggtactgtcacccact
agggagttggcaacgcagatacaagacgaagctgtcaagtttggtaaatcatcaagaatt
tcctgcgtgtgtctctacggaggagcaccaaaaggtccccagttgcgggatatagacaga
ggagctgacgtcgtggttgccactcctgggcgtttgaatgatatcctggagatgaagaga
atcagcctccaacaagtttcttaccttgtgctggacgaggcagatcgcatgctggacatg
ggtttcgaacctcagatacgaaagattgttagggaggtgcctgctcgccgccagactctc
atgtacactgccacgtggccaaaagaggttcgtaaaattgcagcagatctgctggttaat
cctgtgcaggttaacattggtaatgtggacgagcttgttgcaaacaagtctatcacacag
catgtggaagtcttggctcccatggagaagcacagacggttggagcagatacttcgctct
caagagccaggttcaaaaataattatcttctgttctactaagaaaatgtgtgatcagctt
gcgcgaaacctcaaccgccagttcggagctgctgcaatacatggagacaagtctcagagt
gagagggattttgtgctaaatcaatttcggtccggaaaatctcctatcttggtagcaact
gatgtagcagcccgaggattggatatcaaagatataagggtggttatcaattatgacttc
cctactggtgtggaggattatgttcatcggattggaagaactggaagggcaggagctagt
ggattagcgcacacattttttagtgaccaggatgcgaaatatgcagcagaacttatcaaa
gttcttgagggggcaaaccagcgagtcccaccagaaattcgtaatatggcttctcgtggt
ggtggaatgggaaggtttaatagacgctggagctctgattctggtggcagagatggaggc
cgaggtggacgtggtgattctggttatggtggaagagatgctggaaggggaggttggtca
ttttctgcttctgcttccaacaagggtggtggtcgtggttatggttctgagtcacgtgat
aggttaagcagcggtggccaagatggatatgagagagctagaagtagaagtcccagggga
tcagttcgcagcttccaccaagcaatgatggagagaagccaatctcatcgccctggtgca
tcttccttccacagtgagaaaacaagagagagttcacggagtccgcggcgggcaaagtct
ccttcaccccgtgggaaggataacgagagagggaattttgggggagcgcatggtgatgct
ccatcgaaatgggatggaggatatggtggtgggtcacgctcttcttacctcggggaagaa
gaggaaggcatgattcctgtttga
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