Eucalyptus grandis (rose gum): 104420011
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Entry
104420011 CDS
T03547
Name
(RefSeq) regulator of nonsense transcripts UPF3
KO
K14328
regulator of nonsense transcripts 3
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr03013
Nucleocytoplasmic transport
egr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104420011
03015 mRNA surveillance pathway
104420011
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egr03019
]
104420011
Messenger RNA biogenesis [BR:
egr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104420011
mRNA cycle factors
P-body specific factors
104420011
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
104420011
NCBI-ProteinID:
XP_010030190
UniProt:
A0A059ATZ5
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Position
9:complement(43466690..43475527)
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AA seq
486 aa
AA seq
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MKGHPDRTKVVLRHLPPSITEGMLADQIDTAFAGRYNWFSFRPGKTSLKHQVYSRAYINF
KRPEDVIEFAEFFEGHVFVNEKGTHFKTIVEYAPSQRLPKQTSKKDGREGTIMKDPEYLE
FLEFIAKPVENLPSAEIQLERREAERSGIAKEAPIVTPLMDYVRQKRASKGGSRRSIANE
KMSGRGGGSSAGSSSSAPSKRNSEKRKSSTAMYIQRDASRSSSGKDKSMYILSSKRDDPQ
LSDKANLSAVTSGAGQPEDGNGTIGFGIAGAGKKKILLLKGKEREISHVSGGVLQEQCQL
KDVMGSTTDKQKQRHEGGRIIRTILLNKDARQNQLGVPSETQTQTMQLGKERRPPRGPST
QAVPKDTNGAPDEKVHGNGLSGFGSEKLERRARNKDRPDRGVWAPLRRLDGSHASDSTIS
ATSAHSTLDSSEGFRKSVGRRGSSQGGKDNDGSPLTSEQKSSKRGSASGYSSHEKQVWVQ
KSSSGS
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggccatccggatcggaccaaggtggttctacggcacttgccgccgtcgattacg
gagggcatgctcgcggaccagatcgacaccgccttcgcgggccgctacaactggttctcc
ttccgccccggcaagaccagcctgaagcaccaggtctattcaagagcctacatcaacttt
aagagacctgaggatgttattgaatttgctgagttttttgaggggcacgtgtttgtgaat
gagaaaggtactcatttcaagactatagtcgaatatgctccttcacaacgtttacccaag
cagacatctaaaaaagatggccgtgaagggaccataatgaaagatcctgagtacttggaa
ttccttgaatttattgcaaagccagttgagaatcttccaagtgcagagatacaattggag
agacgtgaggcggagcgatctggtattgcaaaagaagcacctatagtgactcctttgatg
gattatgttcgccagaagagggcgtcaaagggtggatctcggaggtcaatcgctaatgag
aaaatgagtggaagaggaggtggatcgtctgctggaagctctagttctgcaccatcgaaa
cgaaattctgaaaagagaaaaagttctactgcaatgtatattcaaagagatgcttcgagg
agcagcagtggcaaggacaagtccatgtacattctgtcttccaagcgagatgatcctcaa
ctttctgacaaagctaatctttcagcagtgacaagtggagctggacaaccggaagatggc
aatgggactattggatttggaattgctggtgctgggaaaaagaagattttgcttttgaag
gggaaggagagagagatttctcatgtctctggtggtgtattgcaggagcagtgtcaacta
aaagatgtgatgggttcaaccactgacaagcagaaacagcggcatgagggtggtcggata
attagaactatacttttgaacaaagatgcacgccaaaatcaattgggagtcccatctgaa
actcaaacacagactatgcagttaggaaaagaacggaggcctcctcgaggcccaagcaca
caagcagttccaaaagatacaaatggtgctcctgatgagaaggtccatgggaatggcctg
tctggttttggtagtgaaaagctggaaagacgtgccagaaataaagatagacccgatcgt
ggtgtttgggctcctctccgtcgtttagatggatcccatgcaagtgattcaacaatctct
gctacttctgcacattcaaccttggattcctcagaaggtttccgtaagtctgttggtcgt
cggggatcgtctcagggtgggaaagataatgatggctcaccacttacgagtgaacagaag
tcttcaaaaagaggaagtgcttctggttatagttcccatgagaagcaagtgtgggttcaa
aagtcaagttctggatcttag
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