Eucalyptus grandis (rose gum): 104421172
Help
Entry
104421172 CDS
T03547
Name
(RefSeq) uncharacterized protein LOC104421172 isoform X1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104421172
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
egr03021
]
104421172
03019 Messenger RNA biogenesis [BR:
egr03019
]
104421172
Transcription machinery [BR:
egr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104421172
Messenger RNA biogenesis [BR:
egr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
104421172
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NUFIP1
Motif
Other DBs
NCBI-GeneID:
104421172
NCBI-ProteinID:
XP_010031335
LinkDB
All DBs
Position
1:complement(43416740..43421816)
Genome browser
AA seq
599 aa
AA seq
DB search
MFPGFNPLSQSHLGSRVQSNGAAPQQVVPPNPFAGNPCNVLPNPVQLHSQMGILPQSSIP
GYGLMNYMGNGQAVNMALPGLAGAGVVNGPNPLLALQNAQIAMQQLGQLRNMLPSVNQMN
LSGPPGQMLAQNLPQQLNQNMGLQNLLLCLPNAMANVNQLSLAQQLNPSQLPSLSGFLGS
NQGAQALRPQNPFSLANPQGGHDQQLNQNRRNVSSPVMGPSALRPLPSASQQQPQSRLMP
DNVHPEKFSNLPGPLSHGQQENPNYRGGINTSNPNFRNSPRKDFGWRTGRMASQRGSHRP
HFQDMKDRKRKFEFANNGHRGKGISSEMAGNFGQLHPVNPPQEQKRALSITYTEREIQQW
REERRRNYPSKAKVEKQELTDSRKNELDVKIRQEQLKKILAQQAELGVEIAEIPSHYLSD
MQKKDESLEENSRPWTKKERFQKNRDKRGHHNRRDRFNKKQRLEATSSTDPPSLNKNRTT
LLQKLLSKDIKRDNTRLFQVFRFMVTNSFFKHWPEQSLKFPKVVVDENGCKSEMTGEKSQ
ILSTEGSGVHQDCHDGNSDRGGDKFSDDENRDVCHSHVEKSFHGKRDGLPDEEEGEIID
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atgtttccgggcttcaatccgctgtctcagtctcatctgggcagccgagtccaaagcaat
ggcgctgcgccccagcaggtcgttcccccgaaccctttcgcgggtaatccttgtaatgtg
ttgccgaaccccgtgcagcttcactctcaaatggggattcttcctcagtcttcgataccc
ggttatggtcttatgaattacatgggcaatgggcaggctgtgaacatggctctgcctggt
ttggcgggagccggcgtcgtgaatggacccaacccattgcttgctttgcaaaatgctcag
attgcgatgcagcaactcggtcagttgcggaatatgttgcccagtgtgaaccagatgaac
ctgtctgggccacctgggcagatgctcgctcagaacttgcctcaacagctgaatcagaac
atgggtctgcaaaatttgctcctgtgtttgccgaatgcgatggcgaatgtcaatcaactt
tcgctcgcacagcagttgaatccttctcagcttccttctttgagtggtttcctgggttcc
aatcagggagctcaggccttacgtccgcaaaatcctttctctttggccaatccacaaggt
ggtcacgatcaacagcttaatcaaaatcggcgaaacgtaagttctcctgtcatgggtcca
agtgcattgagaccattgcccagtgcaagtcagcaacagccacaaagccgtcttatgcca
gataatgttcatccagagaagttttcaaacttgccaggtcctctatcccatggacaacag
gaaaatcccaattatagaggtggcatcaatacttcaaatccaaattttagaaattctcca
agaaaggactttggttggaggacaggccgaatggcttctcaaaggggatctcacaggcct
cacttccaggacatgaaagataggaagaggaaatttgagtttgctaataatggacataga
ggcaaagggataagcagtgagatggcgggaaactttggacaacttcacccagtgaatcca
cctcaggaacagaaaagagctctttcaataacctatacagaacgagaaatccagcagtgg
cgtgaagagcggaggaggaactacccttcaaaagccaaagtggagaagcaggaactgaca
gattccaggaaaaacgaattggatgtcaaaattcggcaggagcaactcaagaagatactg
gcgcagcaagctgaattgggagttgagattgcagaaataccatcacactacctgtccgac
atgcagaagaaagatgagtcgctggaagagaacagtaggccatggactaagaaagagagg
tttcaaaagaatcgtgacaaaagaggacaccataatagaagggaccgattcaacaagaag
cagagattggaggccacaagttcaacagatcccccttctttgaacaagaacaggacaaca
ctcctgcagaagctcttgagtaaagatataaagagagataacacccgcctctttcaggtt
ttccgttttatggtaacaaactccttctttaagcattggcctgagcagtctctgaaattt
ccaaaggtagtggttgatgagaatgggtgcaagagtgaaatgacaggagagaagtcgcag
attctctcaaccgaaggtagtggagtccatcaggattgtcatgatggaaattctgatagg
ggaggtgataaattcagcgatgatgagaatagagatgtttgtcattctcatgttgaaaaa
agttttcatgggaagagggatggcttaccagatgaagaagaaggagaaatcatcgactga
DBGET
integrated database retrieval system
