Eucalyptus grandis (rose gum): 104421462
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Entry
104421462 CDS
T03547
Name
(RefSeq) DNA mismatch repair protein MSH2
KO
K08735
DNA mismatch repair protein MSH2
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
104421462
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
egr03400
]
104421462
DNA repair and recombination proteins [BR:
egr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
104421462
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
ATG17_like
CysS_C
Motif
Other DBs
NCBI-GeneID:
104421462
NCBI-ProteinID:
XP_010031721
UniProt:
A0A059CZP2
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Position
2:8679235..8687597
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AA seq
942 aa
AA seq
DB search
MEEAFEEHNKLPEFKLDVKQAQGFLAFFRGLPSDARAVRFFDRRDYYTAHGENAVFIAKT
YYHTTTALRQLGNGPNGLSSVSVNKNMFETIARDLLLERTDHTLEVYEGSGSNWRLVKTG
SPGNIGSFEDVLFANCDMQESPVVVAIVPIFRDAGYTVGLGYVDLTNRILGLAEFIDDSH
FTNLESALVALGCKECLLPVEGSKGNENKALRDALTRCGVMVTERKKTEFKTRDLVEDLG
RLVKGPVQPVRDLIANFEYAPGSLGALLSYSELLADESNYGNYSIRKYSLDCYMRLDSAA
MRALNVLESKTDANKNFSLFGLMNRTCTAGMGRRLLHRWLKQPLLDVGEINTRLDLVQAF
VDDTALRQDLRQHLKRISDIERLVHNLNKRRAGLQHIVKLYQSSARVPYIKSALQNYDGQ
FSSLIKEKYVEALQILTNDDHLNKFISLVETAVDLDQLENGEYMISPSYDAGLAELKDEL
ASLEQQIQNLHKQTANDLDLPMDKALKLDKGTQFGHVFRITKKEEPKIRKKLSTQFIVLE
TRKDGVKFTNTKLKKLGDRFQKILEEYKSCQKFIVDKVVNTSVSFSEVFESLAALLSEMD
VLLSFADLASSCPTPYTRPDITPSDVGDIVLIGSRHPCVEAQDWVNFIPNDCKLVRDKSW
FQIITGPNMGGKSTFIRQVGVNILMAQVGCFVPCDKARISVRDCIFARVGAGDCQMRGVS
TFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEYLVEVIKAPTLFATH
FHELTALANENNVDETNEKQVVGVANYHVSAHIDSSNRKLTMLYKVEPGACDQSFGIHVA
EFANFPESVVALAREKAAELEDFSPAAVILNDPGEKEGLKRKRNPDLDDMSKGAARAHRF
LKEFSDLPVETMDLKQALLQVGKLRDELEKDAKDCRWLRQFL
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atggaggaggccttcgaggagcacaacaagcttcccgagttcaaactagatgtcaagcaa
gctcaggggtttctcgccttcttcagaggcctgcccagcgacgcgagggctgttcggttc
ttcgatcgccgggattactatactgctcatggtgaaaatgctgtcttcattgcaaagaca
tattaccatactactacagccttgcggcaattgggtaatggacccaatggcctttccagt
gtaagcgtcaataaaaatatgtttgaaacgattgctcgtgatctacttctggagagaaca
gaccatactttggaggtctatgaaggtagtggctcaaattggagattggtgaagaccgga
agtcctggaaatattggcagttttgaagatgttttgtttgccaactgtgatatgcaagag
tccccagttgtcgtggctatagttccgatctttcgtgatgccgggtatactgttggacta
ggttatgttgatttgaccaacaggattcttggattggctgaatttattgatgatagccac
ttcactaatttggagtcagctttagttgcccttggttgcaaagaatgcttactgcctgtg
gagggtagcaaaggcaatgaaaataaggctttgcgtgatgctttgactagatgtggggtg
atggtaactgaaagaaagaaaacagagtttaagacaagggatttggtggaagatcttggt
aggcttgtcaaaggtcctgtccaacccgttcgagatcttattgccaactttgaatatgct
cctggttctttaggggcattattgtcctattcagaattacttgcagatgagagtaactat
ggaaattacagtatcagaaagtatagcctcgactgctatatgaggctggactctgctgct
atgagggctctgaatgtattggaaagcaaaactgatgcaaataaaaattttagtttgttt
ggtctcatgaataggacatgtactgctggaatgggcagacgattgttgcacaggtggcta
aaacagcctttattagatgtaggtgagataaacaccagactagatttggtgcaagcattt
gtggatgatacagcacttcgacaagatctgaggcagcatcttaagaggatctcggatatc
gagcgattggttcacaatcttaataagagaagagcagggctgcagcatattgtgaagctt
tatcagtccagtgcaagagttccctatatcaaaagtgccctgcagaactatgatggtcaa
ttttcttcactgatcaaggaaaagtatgtggaagcacttcaaattttgactaatgatgac
cacttgaataagttcatcagtcttgttgaaactgctgttgatcttgaccaacttgaaaat
ggagaatacatgatctctcctagttatgatgctggattagctgaactaaaggatgagcta
gcgtcacttgaacagcagattcaaaatttgcataaacaaactgccaatgatctcgatctt
cctatggacaaagcgttgaagttagataaaggtacacagtttgggcatgtatttagaatt
accaagaaggaggagccaaagataaggaaaaagctttccacccagtttattgtcctagaa
acacgaaaggatggagtgaagtttactaacacgaagcttaaaaagttgggagaccgcttc
cagaagattcttgaagagtacaaaagttgtcagaaatttatcgttgacaaagtagttaac
acatctgtgtccttctcagaggtatttgaatctttggctgcattactttctgaaatggat
gttctccttagctttgctgatctggcttctagttgcccaactccatatacaagaccagat
atcactccatctgatgttggagatatcgtcctaataggaagtagacatccctgtgtggag
gctcaggactgggttaactttatacccaatgattgtaagctagtcagagataagagttgg
ttccagattatcactggacctaacatgggaggaaaatccacatttattagacaggttggt
gtgaacattctgatggctcaggttggttgttttgttccctgtgacaaggctagaatatct
gttcgagactgcatttttgctcgtgtgggagctggtgactgccaaatgcgtggagtgtcc
acttttatgcaagagatgcttgaaacagcttcaatcctgaaaggagctaccgatagatcg
ttgataatcattgacgagttgggtcgtgggacatcaacttacgatggatttggtttagca
tgggccatatgtgagtaccttgttgaggttatcaaagcgccaactttgtttgcaacccac
ttccatgaactgactgccttagccaatgaaaacaatgttgatgaaactaatgagaagcaa
gttgttggggtagcaaattatcatgtcagtgcacacattgactcatcaaatcgcaagctg
accatgctttacaaggttgagccaggggcctgtgatcagagttttggtatacatgttgct
gagtttgcaaattttcctgaaagtgttgttgcacttgcaagagagaaggctgcagaatta
gaggatttctcacccgctgcagttattttaaatgaccctggagaaaaggagggactgaaa
cgaaagagaaaccctgatcttgacgacatgtctaaaggtgctgctcgagctcatcggttc
ttgaaggaattctctgatcttccagtagagacaatggacctgaagcaggctctgctgcaa
gtaggcaaattgagggatgagttggagaaagatgcaaaagactgtcgctggcttcggcaa
ttcttatag
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