Eucalyptus grandis (rose gum): 104421971
Help
Entry
104421971 CDS
T03547
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104421971
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egr03019
]
104421971
03012 Translation factors [BR:
egr03012
]
104421971
Enzymes [BR:
egr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104421971
Messenger RNA biogenesis [BR:
egr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
104421971
Translation factors [BR:
egr03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
104421971
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
AAA_19
Dicer_dimer
NACHT
nSTAND3
T2SSE
ATPase
AAA_16
AAA_30
NPHP3_N
PhoH
Motif
Other DBs
NCBI-GeneID:
104421971
NCBI-ProteinID:
XP_010032464
LinkDB
All DBs
Position
2:10275034..10286997
Genome browser
AA seq
1198 aa
AA seq
DB search
MAYSAIFHGCLRAAMSARPPPPAVVHLRRACRASAAPPPASALRARAALLRSVRPPTLLE
RRMIACLAVEVDRRRRRGGGGGVESQFQRRQSSSYGRFAYHDVSSDESDLEVGSSQQQQQ
QIHASTLDNVEEWKWKLTMLLRNKEEQEMVSRERKDRRDFDQLSALATRMGLYSHQYSKV
VVFSKVPLPNYRSDLDDRRPQREVVLPYRLQMEVDTHLQAHLSRKPKSRDKLLYSSKSSG
VDGGIAVDDLYGEQERITPNSVVVEKIQRRRSLQLRNKQQDWQESPEGQKMLEFRRNLPA
YKEKDALLKAISENQVVVVSGETGCGKTTQLPQYILESEIEAAQGAACSIICTQPRRISA
MAVSERVASERGEQLGDSVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDRNLTGVTHVI
VDEIHERGMNEDFLLIVLKDLLRRRPELRLILMSATLNAELFSNYFGGAPMIHIPGFTYP
VRAHFLENILETTGYRLTPHNQIDDYGQDKSWKMQRQAVKKRKSQIATAVEDALESADFR
GYSRWTRESLSCWNPDSIGFNLIEHVLCHIVQKERPGAVLLFMTGWDDINSLKDQLQAHP
LLGDPSRVLLLACHGSMASSEQRLIFDKPPDGVRKIVLATNMAETSITINDVVFVVDCGK
AKETSYDAINNTPCLLPSWISKAAARQRRGRAGRVQSGECYHLYPRCVYDAFADYQLPEL
LRTPLQSLCLQIKSLQLGSITEFLSRALQPPESLSVQNAVEYLKVIGALDENENLTVLGR
QLSMLPVEPKLGKMLILGAIFNCLDPVMSIVAGLSVRDPFLMPFDKKDLAESAKAQFSGR
DYSDHLALARAYDGWRDAERQQAGYEYCWRNFLSVQTMKAIGSLRRQFLSLLKDSGIVDQ
NTEFSNSWSHDEHLIRAIICAGLFPGISSVVNKERSISLKTMEDGQVLLYSNSVNAGVPK
IPYPWLVFNEKVKVNSVFLRDSTGISDSVLLLFGGNISRGGLDGHLKMLGGYLEFFMEPS
LAETYLSLKRELGELIQNKLLSSKLDIRSSHDLLMAVRLLVSEDQSEGRFVFGRQLPKKV
AKVTLQAASSKGANGAAGDNSKTQLQTLLVRAGHEAPTYKTKQVKNNQFRSTVIFNGLDF
TGRPCSNKKLAEKDAAAQALLWLRGETHVSSSDMDAVSTLLKKKKVKNQRTARSSRWG
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
atggcgtactcggccattttccacggctgcctgagggccgcaatgtccgcgcggccgccg
ccgcccgccgtcgtccacctccgcagggcttgcagggcctccgcggctcccccgcccgcc
tccgccttgagggctcgggcggcgctgctgaggtcggtgcgcccgccgactttgctggag
cggcggatgatcgcgtgcttggccgtggaggtggaccggaggcggcggaggggcggcggc
ggcggcgtcgagtcgcagttccagcgccggcagagctcgagctacggccggtttgcttat
cacgacgtgtccagcgacgagtcggaccttgaagtcggttcatctcagcagcagcagcag
cagatacacgcatcaacccttgacaatgtggaagagtggaagtggaagttgaccatgctt
cttcgtaataaagaggagcaggagatggtatctagggagaggaaagacagacgtgacttt
gatcaactttcagccctggcaaccaggatgggattgtatagccatcaatattcaaaagta
gttgtctttagcaaagtccctctgccaaattacagatctgatcttgatgacaggcgccca
cagagagaggtggtattaccttatagattgcaaatggaagtggatacacacctccaagca
cacctttcccgaaagcccaaaagtagggataagttattgtattcttcaaaatcatctggc
gttgatggaggtattgctgttgatgatctttatggcgagcaggagcgtattacgccaaac
agtgtagttgtagagaaaattcaacgccggagaagtttacagttgcgtaataaacagcaa
gattggcaggaatctcctgaaggccaaaagatgcttgaatttcgtcgaaatctccctgca
tacaaagagaaggatgccttgctgaaagccatttcagaaaatcaggtggtggttgtctct
ggtgaaactggatgtggtaaaacaactcaacttcctcaatacatacttgaatctgagatt
gaagctgctcaaggggctgcatgtagtataatttgcactcagccaagaagaatatctgct
atggctgtttctgaaagggttgcttcagagcgaggagagcaactgggagattctgttggg
tacaaggttcggttggaggggatgaaagggagggatactcgcttacttttttgcaccact
ggcatattgttgaggagattacttgttgacagaaatttgactggtgtaactcatgttatt
gttgatgagattcatgaacgtggtatgaatgaagatttccttctcattgtgctcaaggat
cttcttcgtcgccgacctgaattgaggctgattttgatgagtgcaaccctcaatgctgaa
cttttttctaattactttggtggtgctccaatgatccacatacctggtttcacctaccct
gtccgagctcattttttggagaatattttggagacgactggatatagattgactccacat
aatcagattgatgattatggtcaagacaaaagttggaaaatgcagagacaagctgttaag
aagaggaagagccaaatcgctactgctgtcgaggatgcacttgaatccgcggacttcaga
gggtacagtcggtggacacgtgaatctctgtcttgttggaacccggattccattggcttt
aatctcattgagcatgtactttgccacatagttcaaaaggaaaggcctggagctgtattg
ctttttatgactggttgggatgacataaactccttgaaggaccagctgcaagcccatcct
ctcttgggtgatccaagcagagttctgttgcttgcctgtcatggatctatggccagctcc
gagcagaggttgatatttgataagcctccagatggagttaggaaaatagtccttgctacc
aatatggctgagactagtatcaccatcaatgatgtagtctttgtggtcgactgtggaaag
gcgaaagagacttcctacgatgcgatcaataacactccttgtctgcttccatcttggatc
tcaaaggctgctgctcgacaaagaagaggaagagctggtcgtgttcaatctggagagtgt
taccacctctatcctagatgcgtttatgatgcttttgctgactaccagttgccagaactt
ctgaggacaccattgcagtccttatgtttgcaaataaaaagtctgcaacttggaagcatc
acagaattcctgtctagggcattgcaaccaccggaatcactttcggtccaaaatgctgta
gaatatctgaaggtgattggagctttagatgaaaatgagaatttgacagtgctaggtcgc
cagctttcaatgcttccagttgagcccaaactgggaaagatgcttatactgggggccatt
ttcaactgtctagacccagtaatgtcaattgttgctggtctcagtgttagagatccattc
ttgatgccatttgacaagaaggatcttgcagagtctgcaaaagcccaattttctggccgt
gactacagtgaccatcttgcacttgctcgagcctatgatggttggagagatgctgaaaga
caacaggctggctatgagtactgttggcgaaattttttatctgtgcaaactatgaaagca
ataggctctctgaggaggcaattcctttctttgctcaaggatagtggcattgttgatcaa
aatacagagttttccaattcatggagccatgatgagcatcttattcgggcaatcatttgt
gcgggtttgttcccaggaataagttctgttgtgaacaaagaaaggtcaatttccttgaag
acaatggaggatggtcaggtgctcctgtactctaattctgtgaatgcgggggtcccaaag
attccatacccatggctggttttcaatgagaaggtgaaggttaattcagttttccttcgg
gattcaacgggtatctctgactctgtgcttctcttatttggaggaaacatttcaaggggt
ggacttgatggtcacctaaagatgttgggaggatatttggagttcttcatggaaccttcg
ttggctgagacatatttaagcctaaaaagagagctaggggaactcatccagaataagctt
ctgagttccaaattagatatacgatcctcccatgatcttctaatggcagtaaggttgctg
gtctcagaagaccaatctgaaggtagatttgtctttggtcgccagttgcctaagaaagtg
gcgaaagtaacattacaggccgcatcatcgaaaggtgcaaatggagctgctggtgataat
tcaaagacccaattgcaaactctacttgttagggcaggacatgaagcaccaacctacaag
acaaagcaagtgaaaaacaatcagttccgttccactgtgatcttcaatggattggatttc
acaggacggccttgcagcaataagaagcttgcagagaaggatgcggccgcccaggcattg
ctctggttaaggggtgagactcatgtatcctcttccgatatggatgctgtgtctacactt
ctaaagaagaagaaagtcaagaatcagaggacagcacgcagcagtaggtggggttga
DBGET
integrated database retrieval system
