Eucalyptus grandis (rose gum): 104422047
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Entry
104422047 CDS
T03547
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr03022
Basal transcription factors
egr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
104422047
09124 Replication and repair
03420 Nucleotide excision repair
104422047
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
egr03021
]
104422047
03400 DNA repair and recombination proteins [BR:
egr03400
]
104422047
Transcription machinery [BR:
egr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
104422047
DNA repair and recombination proteins [BR:
egr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
104422047
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
DUF4709
SHOCT
UVB_sens_C
Motif
Other DBs
NCBI-GeneID:
104422047
NCBI-ProteinID:
XP_010032566
UniProt:
A0A059AE27
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Position
10:complement(16995332..17004448)
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AA seq
596 aa
AA seq
DB search
MASAQVIKRAKYKTTVKDPGTAGVLKMAWDRFIFTPNHPNSASNLDVEFRFIKGHKNTKE
GSNKPPWLNLTNDQGGSYIFEFESYPDLHTCRDFVGKSIGRSGETPTAASGKTDASLPDE
QISTAELELRIKLLRENSELQKLHKQLVIGGILTEAEFWATRKKLLDRESSRKSKQRVGF
KSAMISDIKPATDGRTNKVTFSLTPEVILQIFAEKPAVHAAFLKYVPKKMTEKDFWTKYF
KAEYLHSTRNAVAAAAEAAEDEELAIFLRNDDILAKEARQKIRRVDPTVNMEADQGDDYM
HLPDHGLFRDGGKDIIESQYELYRRTLAHDLNRHAAVVLEGRTVEVELEDTRTVAEALAK
LKRVESANEDSDGTANQGILERIARITEIEDLQASHGPPLAPLCIKDPRDYFDSQQVIAV
KAPAAEGKKCNLSSREAYGSLRDSISQTKQMGLLNPVVKTKDALQVFNALSHDISRTKYD
VGKNPQDSVLDKLPSTTKEQLLHHWTSIQELLRHFWSSYPITSSYLYAKVNRLKDAMSQI
YPQLEEIKKSVPAHHKQHVSVLVRQMHQALDAAFQHYDADLQKRSAKSSERPNGYV
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atggccagcgcgcaggtgattaagcgtgccaagtacaagactacggtgaaggaccccgga
actgctggcgttctcaaaatggcttgggacagatttattttcactcctaatcatcccaac
tctgcgtcaaatcttgatgtggagtttagatttattaaaggtcataaaaacaccaaggag
ggatcaaataaaccaccatggctcaacctcacgaatgatcaaggtggaagttacatattt
gaatttgaaagctatcccgatctccacacatgcagagattttgtaggaaaatccattggg
agatctggggagactccaacggctgcctccggaaagactgatgcctcacttcctgatgaa
caaatcagcacagctgaattggagctccgcatcaagcttttgagagaaaacagtgagttg
cagaaacttcacaagcaacttgtgattggtgggatcctgacagaagcagagttttgggcg
acaaggaagaagttgctggatcgagagtcaagtagaaaatcaaaacaacgtgtgggcttc
aaaagcgccatgatttcagacattaaaccagcaacagatggcaggacaaacaaagttact
tttagtttgacaccagaagtaatccttcagatttttgctgagaagcctgcggttcatgca
gcattcttgaaatatgttcccaaaaagatgacggagaaggacttctggaccaagtacttt
aaagcagagtaccttcacagcacaagaaatgctgttgctgctgctgcggaggctgctgaa
gatgaagagcttgctatttttctcaggaatgatgatatattggccaaggaagcacggcag
aagatccggcgggttgatcctactgtaaacatggaagctgaccaaggagatgactacatg
cacttgcctgatcatggactttttcgtgacggtggcaaagatataattgaatctcagtat
gagctttacaggaggactttagctcacgacctgaatcggcatgctgcagttgtgcttgag
ggaagaacagtagaggtggaattggaagacacaaggacagttgcagaggcacttgccaag
ttgaaacgggttgagtccgctaatgaggattctgatgggaccgccaatcaggggatattg
gaaaggattgctcgtatcacagagattgaggaccttcaggcatctcatggcccgccactt
gctccactctgcataaaagatcctcgagactactttgattcccagcaagtcattgccgtt
aaagccccagcagcagagggaaaaaagtgcaatttgagctccagagaagcgtacggatct
ctgagggactcaatatcacagactaaacaaatgggacttcttaatcctgttgtaaagact
aaagatgctctgcaggttttcaatgcactttcccatgatatatcaagaaccaaatatgac
gttggaaagaatcctcaggatagtgttctggacaagttgccaagcacaaccaaggagcag
cttcttcatcattggacgtccatacaagaattattgaggcacttttggtcatcatatcca
attacaagttcttacctttatgcaaaggtaaacagactgaaggatgccatgtcacaaata
tacccacagcttgaagagatcaagaaatctgtgccagcccaccacaagcagcatgtttct
gttcttgttcgccaaatgcatcaggccttagatgctgcttttcaacattatgatgcagac
ttgcagaagcgatctgcaaagagcagcgagagaccaaatggatatgtgtag
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