Eucalyptus grandis (rose gum): 104422972
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Entry
104422972 CDS
T03547
Name
(RefSeq) sm-like protein LSM1B
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104422972
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egr03019
]
104422972
Messenger RNA biogenesis [BR:
egr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104422972
mRNA degradation factors
5'-3' decay
Lsm complex
104422972
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
104422972
NCBI-ProteinID:
XP_010033722
UniProt:
A0A059AIP1
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Position
10:complement(34270581..34274136)
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AA seq
128 aa
AA seq
DB search
MSWASPEDTYLSTSLASYLDKKLLVLLRDGRKLLGILRSFDQFANAVLESACERAIVGDL
YCDIPLGLYVIRGENVVLIGELDVEKEELPPHMRRVSTAEIRRAQKAEREASDLKGTMRK
RMEFLDLD
NT seq
387 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgggcaagccctgaagacacttacctgtccacttccctcgccagctatcttgac
aagaagcttcttgtactgctgcgagatggtcgaaagctgttgggtatacttcgctcattc
gatcaatttgcaaatgctgttctagagagtgcatgtgaaagagctattgttggcgaccta
tactgtgacatccctttaggtctttatgtaatacgtggggagaatgtagttttgatcggt
gaactggatgttgaaaaagaggagcttcccccacatatgagacgggtttcaacagctgaa
attagaagggcgcagaaggcagaaagggaggcttcagaccttaaaggcaccatgaggaaa
aggatggagttcttggatctggattaa
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