Eucalyptus grandis (rose gum): 104423249
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Entry
104423249 CDS
T03547
Name
(RefSeq) ubiquitin receptor RAD23b isoform X1
KO
K10839
UV excision repair protein RAD23
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr03420
Nucleotide excision repair
egr04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
104423249
09124 Replication and repair
03420 Nucleotide excision repair
104423249
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
egr03051
]
104423249
03400 DNA repair and recombination proteins [BR:
egr03400
]
104423249
Proteasome [BR:
egr03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
104423249
DNA repair and recombination proteins [BR:
egr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
104423249
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UBA
XPC-binding
ubiquitin
UBA_7
Rad60-SLD
UBA_3
TECR_N
PARM
DUF6465
Dsc3_N
UBA_RAD5A
Med13_C
Motif
Other DBs
NCBI-GeneID:
104423249
NCBI-ProteinID:
XP_010034055
UniProt:
A0A059AJF1
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Position
10:complement(37958123..37962789)
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AA seq
388 aa
AA seq
DB search
MKLTVKTLKGTNFEIKVQPTDTIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA
DNKVSEDGFLVVMLSKQSKISGSAGTSSTQPVSTTAATTAATTAATTAATTAATTAPSNP
SPAPDAPAQAPPSKGTSTSEGSTANVPSDAYSQAASHLVAGNNLEESIQQLMDMGGGTWE
REMVVRALRAAYNNPERAVDYLYSGIPESAEIAVPGVHPASQANEAGAAAPVPTSGAPNT
SPLNLFPQEALSSAAAGGGLGTLDFLRNNQQFQALRSMVQANPQILQPMLQELGKQNPQL
LRLIQEHHAEFLQLINEPLDGSEGDIFDQPDQDMPHAINVTPAEQEAIERLEAMGFDRAL
VIEAFLACDRNEELAANYLLEHAGDFED
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcaccgtcaagacgctcaaaggcaccaactttgaaatcaaagtgcagcccacc
gacaccataatggctgtcaagaagaacattgaagatgtacaggggaaggacaactacccg
tgtgggcagcagttgctgattcacaacggtaaggtattgaaggacgagaccacattggct
gacaacaaggtctctgaagatggcttccttgttgtcatgctcagcaagcagagcaagatt
tcaggctcagctggcacttcgtccacacagcctgtttctaccactgcagcaacaactgca
gcaaccactgcagcaaccactgctgcaaccactgcagcaaccactgcaccttctaaccct
tctccagcacctgacgcccctgcacaagcacctccttcaaagggcacatccacttcagaa
gggtcaacagctaatgtgccttctgacgcctacagtcaagctgcttcccatttagttgct
ggaaataatctggaggaaagcatccagcaattaatggacatgggtggtgggacctgggaa
agagagatggttgtacgtgctctccgagctgcatacaataatccagagagagcagtggat
tatctatattctggtataccggaatcagctgaaattgctgtacctggggttcatcctgct
agtcaggcaaatgaagcaggtgcagcggcacctgtacctacatctggggcacctaatact
tctcctttaaatttgtttcctcaggaagcactgtcaagtgctgctgctggtggtggactt
ggaacgctcgattttcttagaaacaatcaacagtttcaagcattgcgttctatggtgcaa
gcaaatccccagattttgcagcccatgcttcaggaacttggaaagcaaaaccctcagctt
ttacgattgatacaagagcaccatgcagagtttcttcagttgataaatgaacctcttgat
gggtccgaaggggatatatttgatcagcctgatcaagatatgcctcatgctataaatgta
acgccagctgagcaggaggccatagagcggcttgaagcaatgggatttgacagagccctt
gtcatcgaggcatttttggcttgtgaccggaacgaggaattggcggcgaactatctattg
gagcatgctggagattttgaggattga
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