Eucalyptus grandis (rose gum): 104423355
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Entry
104423355 CDS
T03547
Name
(RefSeq) LOW QUALITY PROTEIN: transcription factor bHLH140
KO
K10863
aprataxin [EC:
3.6.1.70
3.6.1.71
3.6.1.72
]
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
104423355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
egr03400
]
104423355
Enzymes [BR:
egr01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.1 In phosphorus-containing anhydrides
3.6.1.70 guanosine-5'-diphospho-5'-[DNA] diphosphatase
104423355
3.6.1.71 adenosine-5'-diphospho-5'-[DNA] diphosphatase
104423355
3.6.1.72 DNA-3'-diphospho-5'-guanosine diphosphatase
104423355
DNA repair and recombination proteins [BR:
egr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
104423355
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
104423355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DcpS_C
AAA_33
zf-C2HE
Macro
HIT
AAA_29
AAA_18
AAA
Zeta_toxin
CPT
AAA_16
MeaB
AAA_22
ABC_tran
AAA_17
nSTAND3
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
104423355
NCBI-ProteinID:
XP_039156808
LinkDB
All DBs
Position
1:19266946..19271037
Genome browser
AA seq
720 aa
AA seq
DB search
MEMEVDDGSEARVEEKGKRLVVLLVGAPGSGKSTFCDAVVGASRRPWVRICQDTIGNGKA
GTKAQCVKSALSALKDGKSVFIDRCNLDREQRAEFLKLGSAQIEVHAVMLDLPTQLCISR
SVKRTGHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITFCHNDAEVQAALGAYSGLGP
SDGLPPGCFGQKSQDAKVQVGIMKFLKKAEGPSPRTNAYSSECSSERRKQGQRRCSPGHR
XXCSTLAFPSISTADFQFNLEKASDIIVETVEEFVPKLGNARLVLVDLTYESKILSLVRA
KAAKKSIDSSKFFTFAGNIIELSTKGGLNCNVIANAANWRLKPGGGGVNAAIFKAAGGDL
EKATNERVKSLLPGSAVVVPLPSTSPLYNREGITHVIHVLGPNMNPQRPNCLNNDYNKGC
MVLRQAYTSLFEGFLSLLKLQEKSVTKRHEEFLHHSGHGPDKNVANGDLKNKRDDADVSI
SSKKSRGSGDEVETHITRPRTGNSDSGTQTTNSGMTKVWGSWAQALYHIAMNPERHKDDI
LEILEDVVVLNDAYPKAQKHILILAQARGLDCLADVHEVHLELLRRMHAIGLKWVEKFLH
EDSQLVFRLGYHSAPSMRQLHLHVISQDFNSVHLKNKKHWNSFNTAFFRDSVDVIEEVNK
NGKAIIKDDESLLSMELRCHRCRSAHPNIPRLKSHIQNCQVPFPAFLLQSDRLVRAPDSN
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atggagatggaggttgatgacggttcggaagcacgagtggaggagaaggggaagcgattg
gtggtgctgctggtgggagcacccggtagtggcaagtccaccttctgcgacgccgtcgtc
ggcgcttctcggaggccgtgggtccgaatttgtcaggacacaattggaaatgggaaagct
gggacgaaggcacagtgcgtcaagagtgccttgagtgcgttgaaggacggcaagagcgtc
ttcatcgacagatgcaatctagacagggaacagcgtgcggagttcctgaaactcggctct
gcccaaattgaggtgcatgccgtgatgcttgatcttcctactcagctttgtatttctcga
tctgtcaagcggacggggcatgaagggaacttgcaaggtggaaaagctgctgctgttgtg
aatagaatgctgcagaagaaagaattgcctaagctgagtgaagggttttctcggattaca
ttttgccataatgatgctgaagttcaggctgctctgggtgcatacagtggtcttggtcca
tcggatggtcttccaccaggctgtttcggccagaaaagccaagatgcgaaggttcaagtg
ggaatcatgaagttcctaaagaaagcagagggaccttctccaagaacaaatgcctattct
tccgaatgctcctcagaaagaagaaagcaagggcaaagaagatgcagtccaggccataga
taatgatgttccacgctggcatttccatccatttcgacagccgatttccagtttaacctc
gaaaaggcttctgatatcattgtcgagacagttgaggaatttgtgcctaagcttggaaat
gccaggcttgttttagtggacttgacttatgaatcgaaaatcttgtccttggttcgggct
aaagctgcgaagaagagtattgactcaagcaagttcttcacatttgcaggcaatataatt
gagctctctacaaaaggaggtttaaactgcaatgtcatagctaatgctgccaattggcga
ttaaaacctggaggtggaggcgttaatgctgctatttttaaggctgcaggtggggacctg
gaaaaggcaacaaatgaacgagttaagtcacttctcccaggtagtgctgtggttgttcct
cttccttcaacttctccactgtacaacagggaagggataacacatgtcatccatgtcctt
gggccgaatatgaacccacaaagaccaaattgtcttaacaacgattataataaaggctgc
atggttctccgtcaagcatatacatcactctttgaaggattcttgtcattattgaagtta
caagaaaaatcagttacaaaaaggcatgaagagttcctgcatcactccggacatggtcct
gataaaaatgttgcaaatggtgatttgaagaataagagggatgatgccgatgtatctatt
agcagcaaaaagagtcgaggatctggagatgaagttgagactcacatcacacgtcccaga
actggaaattcagattcaggtacccaaactaccaacagcggaatgacaaaagtatggggc
tcttgggcccaggctctctatcatattgctatgaatccagaaaggcataaggatgacatt
ttggaaatactagaggatgttgttgtgctaaatgatgcttatcctaaggcacagaagcat
attctcatcttggcacaagctagaggtcttgattgcctggcagatgtgcatgaagtacac
cttgaactgttgaggagaatgcatgccattggcttgaagtgggttgagaagttcttgcat
gaagattcccaactagttttccgtctcggatatcactcggcaccatcaatgaggcagctt
caccttcatgttatcagccaagattttaattcagttcatctcaagaataagaagcattgg
aactcatttaacactgctttcttccgcgactcagttgatgtcattgaggaggtgaacaag
aatggaaaagcaattataaaagacgacgagagtctactttctatggagttacgttgccac
agatgtagaagtgcacatccaaacattccccggttgaaatcacatattcagaattgccag
gtcccttttccagcttttttgcttcaaagtgatcgccttgtgcgtgcaccggatagtaat
taa
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