Eucalyptus grandis (rose gum): 104424282
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Entry
104424282 CDS
T03547
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B isoform X1
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr04120
Ubiquitin mediated proteolysis
egr04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
104424282
04120 Ubiquitin mediated proteolysis
104424282
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
egr04121
]
104424282
Enzymes [BR:
egr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
104424282
Ubiquitin system [BR:
egr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
104424282
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
zf-ANAPC11
zf-RING_5
zf-RING_11
zf-RING_16
zf-C3HC4_4
DUF7371
zf-HC5HC2H
Prok-RING_4
zf-RING-like
zf_RING_Vps8
Motif
Other DBs
NCBI-GeneID:
104424282
NCBI-ProteinID:
XP_010034952
UniProt:
A0A058ZWM6
LinkDB
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Position
11:232329..237142
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AA seq
534 aa
AA seq
DB search
MMRLQTYAGLSIIATLAVIYHAFSSRGQFYPAMLYLSTSKISLVLLLNMGLVFMCILWQL
TKRVFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLA
QKRVEYIETTPSVPMLSHIRIVSFMGFLLLVDSLFFYNSMKFLIQTRQASVSLFFAFEYM
ILATTTVSTFVKYVFYVSDMLMEGQWEKKAVYTFYLELIHDLLHLSMYLCFFLVIFMNYG
VPLHLIRELYETFRKFKIRVADYIRYRKITSNMNDRFPEATPEELNASDATCIICREEMT
TAKKLNCGHLFHVHCLRSWLERQHTCPTCRALVAPPENGTAAAGGQHGQPSDSRQQGAAT
TSTASQGSSDVGSTGNNLSGHQARIQAAAAAASIYEKSLVYPSTNTLVWSSGYAYLPQQN
APFPSHSSADCSGPQQSTVHGDPGNMSVSQLSSIVYVPVPAPAATEDRIQGGHDDLSEAR
FLQQHIEELQKKLQSLREKPFEGNVSSGPSASADNKGKAAVSSSFPVSDSNSSC
NT seq
1605 nt
NT seq
+upstream
nt +downstream
nt
atgatgaggttgcagacgtacgcggggctcagtataatcgcgacgttggccgtgatttat
catgcgttcagcagtcgaggccagttctacccggctatgctttatctgtccacttccaaa
atcagtttggtgttgcttctcaacatgggtctggtctttatgtgcatcttgtggcaattg
accaagcgggtgttcctcggttccctgcgggaagccgaagtggagaggcttaacgagcaa
tcgtggagagaggtcatggaaatcctctttgccatcaccattttcaggcaggatttctcg
gttaccttcctggccatggttactgccctgttgttgatcaaagctttgcactggttggct
cagaagagggtcgagtacattgagacaaccccttctgttcccatgctgtctcacatcagg
atagtttcttttatgggattcctgcttctcgtggacagtctgtttttctacaactctatg
aagttcctcatacagacgcggcaggcctccgtctcccttttctttgcatttgagtacatg
atactggccacaacaactgtgtcaacttttgttaagtatgttttctacgttagcgacatg
cttatggagggccagtgggaaaagaaagctgtttacaccttttacttggaactaatacat
gacctgctacacttgtcgatgtatctgtgcttctttcttgtgatattcatgaactatggt
gtacctctgcacttgattagggagctttacgagacattcagaaaattcaaaattcgcgtt
gctgattacattcgttaccgaaagattacttcaaatatgaatgatcggtttccagaagct
acaccagaagagcttaatgcaagtgatgcaacatgcattatatgtcgagaagagatgact
acagcaaagaaattaaattgtggacacctttttcatgtacattgccttcgttcatggctc
gagcgacagcatacatgtcctacttgtagggctctagttgcaccaccagaaaatgggaca
gctgctgcaggaggacaacatggacaaccttcagattctcggcaacaaggggctgctacc
acaagcaccgcatctcagggctcaagtgatgttggttcgactggtaataatctaagtggg
catcaggccagaatccaagctgctgcagctgctgcatcaatatatgagaagtctcttgtt
tacccttcgacaaacacattagtatggtcgtcagggtatgcctaccttcctcagcaaaat
gcgccattccctagtcattctagtgcagactgcagtggtccacagcaatctacggtccat
ggtgatcctggaaatatgtccgtctcacaattgtctagcattgtttatgtcccagttcca
gctcctgcagccactgaagacaggattcagggaggtcatgatgacttatcagaggcccgt
tttctgcaacagcacattgaggagctgcaaaagaaacttcaatcgctacgagagaaaccc
tttgaagggaacgtgtcttcaggtccctcggcatcagcagataacaaagggaaggctgct
gtgagctcctcgttccctgtttcggactcaaactcgtcatgctga
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