Eucalyptus grandis (rose gum): 104425081
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Entry
104425081 CDS
T03547
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
104425081
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egr03019
]
104425081
03009 Ribosome biogenesis [BR:
egr03009
]
104425081
04131 Membrane trafficking [BR:
egr04131
]
104425081
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
egr04147
]
104425081
Messenger RNA biogenesis [BR:
egr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
104425081
Ribosome biogenesis [BR:
egr03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
104425081
Membrane trafficking [BR:
egr04131
]
SNARE
SNARE associated proteins
Others
104425081
Autophagy
Aggrephagy
Other aggrephagy associated proteins
104425081
Exosome [BR:
egr04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
104425081
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
CDC48_2
AAA_16
AAA_33
AAA_2
AAA_22
AAA_5
AAA_14
TIP49
NPHP3_N
nSTAND3
AAA_28
RNA_helicase
Mg_chelatase
AAA_17
AAA_18
IstB_IS21
ATPase_2
ABC_tran
Parvo_NS1
Viral_helicase1
Vps4_C
AAA_7
NACHT
AAA_lid_PRS2_C
NB-ARC
TsaE
Zeta_toxin
DUF815
Sigma54_activ_2
KAP_NTPase
Molydop_binding
Motif
Other DBs
NCBI-GeneID:
104425081
NCBI-ProteinID:
XP_010035969
UniProt:
A0A059A2E3
LinkDB
All DBs
Position
11:complement(16200704..16206480)
Genome browser
AA seq
807 aa
AA seq
DB search
MASQAESSDPKGTKRDFSTAILERKKAANRLVVDEAVNDDNSVVSLHPETMEKLQLFRGD
TILVKGKKRKDTVCIALADDTCDEPKIRMNKVVRQNLRVRLGDVVSVHQCPDVKYGKRVH
ILPVDDTIEGITGNLFDAFLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETEPAEYCV
VAPDTEIFCEGEPVRREDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK
PPKGILLFGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN
APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPA
LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVDLERIAKDTHGYVGADLAALCT
EAALQCIREKMDVIDLEDETIDAEILNSMAVTNEHFQTALGTSNPSALRETVVEVPNVSW
QDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ
ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGA
ADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQI
FKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRSCKYAIRENIEKDIERERRRRDN
PEAMEEDVEDEVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFAD
ASAGAGAAGSDPFAASAGGADDDDLYS
NT seq
2424 nt
NT seq
+upstream
nt +downstream
nt
atggccagccaagccgaatcctccgaccccaaggggacgaagagggacttcagcaccgcg
atcctggagcgcaagaaggccgccaaccgcctcgtcgtcgacgaggccgtcaacgacgac
aattccgtggtgtccctccacccggagaccatggagaagctccagctcttccgcggcgac
accatcctcgtcaaggggaagaaaagaaaagacactgtctgcattgcacttgctgatgac
acatgcgacgagccaaagattaggatgaacaaagtggtgagacaaaacctgagggttagg
ctgggagatgttgtttcagtgcatcagtgtcctgatgtcaagtatggaaagcgggttcac
atacttcctgttgatgacaccatcgaagggattactggaaatctctttgatgcattcttg
aagccttacttcctggaggcatatcgccctgtgaggaaaggtgatctcttccttgttaga
ggaggaatgagaagtgttgaattcaaggttattgagacggaacctgccgagtattgtgtt
gttgccccagacacagagatcttctgcgagggagaacctgtgaggagggaggatgagaat
agattagatgaggttggttatgacgatgttggtggtgttaggaagcaaatggcgcaaatt
agggagctggtagagctgccattgagacatccacagttattcaaatcaattggtgtgaaa
ccaccaaaaggaatcctgctgtttggacctcctggatctgggaaaaccctcattgctagg
gcagttgcgaatgaaaccggtgccttctttttctgtatcaatggaccagagatcatgtca
aagttggcgggtgaaagtgaaagcaatctcaggaaagctttcgaggaagccgagaaaaat
gcaccttccatcatctttattgatgagatcgattcaattgctccgaagagagagaagact
catggagaagtcgagaggaggattgtttctcagctgctaacgctcatggatggtttgaaa
tctcgtgcccatgtcatagttatcggagctactaaccgaccaaacagtattgacccagct
ttgagaagatttggaagatttgacagggaaatcgatattggagttcctgatgaagttggg
cgccttgaagtcctccgcatccatacaaagaacatgaagcttgcggaagatgttgatttg
gaaagaattgctaaggacacgcatggctatgttggtgctgatctggctgctctctgcact
gaagctgcacttcagtgcatcagagagaagatggatgtcattgacttggaagatgagacg
atagatgcagagatactcaactccatggcagttacaaatgagcacttccagactgctctt
ggaacaagcaatccatctgctctgcgtgagacggtggttgaagtgccgaacgtgagctgg
caagatattggtggtcttgagaatgtcaaaagagagcttcaagagactgttcaatatcca
gtggagcatcctgagaagtttgagaaatttggaatgtcaccttctaagggagtccttttc
tatggacctcctggatgtggcaaaactcttctggctaaagctatagccaatgaatgtcag
gcaaattttatcagtgtgaaaggccctgagttgcttactatgtggtttggagagagtgag
gcaaatgtacgtgaaatttttgacaaagcccgacaatctgccccctgtgttctatttttc
gacgagcttgactcaattgctacacagagaggaagcagtgttggagatgctgggggtgct
gctgatagggttttgaaccaactgctcactgagatggatgggatgtctgcgaagaaaact
gtgttcatcattggagccaccaacagaccagacattatagaccctgcacttctacgtcca
ggccgtcttgatcagctgatttacatccctctccctgatgaagactctcgacatcaaata
ttcaaggcatgcttgaggaaatctccagtctccaaagatgttgatctgagagctcttgct
aagtatacacaaggtttcagtggtgctgatatcacagaaatatgccagcgttcgtgcaaa
tatgccatcagagaaaacatcgagaaagatattgagagggagagaaggagaagggataat
cctgaagccatggaggaggacgtcgaggatgaggtggcagagatcaaagccgcacatttc
gaggaatcgatgaagtatgctcgcaggagtgtgagtgatgctgatattaggaagtatcaa
gcttttgctcagacactccagcagtcgagagggttcggaagcgaatttcgctttgcagat
gccagtgctggtgccggtgctgcgggatcagatccttttgcagcttctgctggcggcgct
gatgacgacgacctatatagttaa
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